Uses of Class
com.milaboratory.core.tree.TreeSearchParameters

Packages that use TreeSearchParameters

Package	Description
com.milaboratory.core.clustering
com.milaboratory.core.tree

Uses of TreeSearchParameters in com.milaboratory.core.clustering

Methods in com.milaboratory.core.clustering that return TreeSearchParameters

Modifier and Type	Method and Description
TreeSearchParameters	ClusteringStrategy.getSearchParameters()

Uses of TreeSearchParameters in com.milaboratory.core.tree

Fields in com.milaboratory.core.tree declared as TreeSearchParameters

Modifier and Type	Field and Description
static TreeSearchParameters	TreeSearchParameters.FOUR_INDELS
static TreeSearchParameters	TreeSearchParameters.FOUR_MISMATCHES
static TreeSearchParameters	TreeSearchParameters.FOUR_MISMATCHES_OR_INDELS
static TreeSearchParameters	TreeSearchParameters.ONE_INDEL
static TreeSearchParameters	TreeSearchParameters.ONE_MISMATCH
static TreeSearchParameters	TreeSearchParameters.ONE_MISMATCH_OR_INDEL
static TreeSearchParameters	TreeSearchParameters.THREE_INDELS
static TreeSearchParameters	TreeSearchParameters.THREE_MISMATCHES
static TreeSearchParameters	TreeSearchParameters.THREE_MISMATCHES_OR_INDELS
static TreeSearchParameters	TreeSearchParameters.TWO_INDELS
static TreeSearchParameters	TreeSearchParameters.TWO_MISMATCHES
static TreeSearchParameters	TreeSearchParameters.TWO_MISMATCHES_OR_INDELS

Methods in com.milaboratory.core.tree that return TreeSearchParameters

Modifier and Type	Method and Description
TreeSearchParameters	TreeSearchParameters.Deserializer.deserialize(com.fasterxml.jackson.core.JsonParser jp, com.fasterxml.jackson.databind.DeserializationContext ctxt)

Methods in com.milaboratory.core.tree with parameters of type TreeSearchParameters

Modifier and Type	Method and Description
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, TreeSearchParameters parameters)
NeighborhoodIterator<S,O>	SequenceTreeMap.getNeighborhoodIterator(S reference, TreeSearchParameters parameters, MutationGuide<S> guide)
void	TreeSearchParameters.Serializer.serialize(TreeSearchParameters value, com.fasterxml.jackson.core.JsonGenerator jgen, com.fasterxml.jackson.databind.SerializerProvider provider)

Constructors in com.milaboratory.core.tree with parameters of type TreeSearchParameters

Constructor and Description
NeighborhoodIterator(S reference, TreeSearchParameters parameters, MutationGuide guide, SequenceTreeMap.Node<O> root) Constrictor for root NeighborhoodIterator iterator.