| Package | Description |
|---|---|
| com.milaboratory.core.clustering | |
| com.milaboratory.core.tree |
| Modifier and Type | Method and Description |
|---|---|
TreeSearchParameters |
ClusteringStrategy.getSearchParameters() |
| Modifier and Type | Field and Description |
|---|---|
static TreeSearchParameters |
TreeSearchParameters.FOUR_INDELS |
static TreeSearchParameters |
TreeSearchParameters.FOUR_MISMATCHES |
static TreeSearchParameters |
TreeSearchParameters.FOUR_MISMATCHES_OR_INDELS |
static TreeSearchParameters |
TreeSearchParameters.ONE_INDEL |
static TreeSearchParameters |
TreeSearchParameters.ONE_MISMATCH |
static TreeSearchParameters |
TreeSearchParameters.ONE_MISMATCH_OR_INDEL |
static TreeSearchParameters |
TreeSearchParameters.THREE_INDELS |
static TreeSearchParameters |
TreeSearchParameters.THREE_MISMATCHES |
static TreeSearchParameters |
TreeSearchParameters.THREE_MISMATCHES_OR_INDELS |
static TreeSearchParameters |
TreeSearchParameters.TWO_INDELS |
static TreeSearchParameters |
TreeSearchParameters.TWO_MISMATCHES |
static TreeSearchParameters |
TreeSearchParameters.TWO_MISMATCHES_OR_INDELS |
| Modifier and Type | Method and Description |
|---|---|
TreeSearchParameters |
TreeSearchParameters.Deserializer.deserialize(com.fasterxml.jackson.core.JsonParser jp,
com.fasterxml.jackson.databind.DeserializationContext ctxt) |
| Modifier and Type | Method and Description |
|---|---|
NeighborhoodIterator<S,O> |
SequenceTreeMap.getNeighborhoodIterator(S reference,
TreeSearchParameters parameters) |
NeighborhoodIterator<S,O> |
SequenceTreeMap.getNeighborhoodIterator(S reference,
TreeSearchParameters parameters,
MutationGuide<S> guide) |
void |
TreeSearchParameters.Serializer.serialize(TreeSearchParameters value,
com.fasterxml.jackson.core.JsonGenerator jgen,
com.fasterxml.jackson.databind.SerializerProvider provider) |
| Constructor and Description |
|---|
NeighborhoodIterator(S reference,
TreeSearchParameters parameters,
MutationGuide guide,
SequenceTreeMap.Node<O> root)
Constrictor for root NeighborhoodIterator iterator.
|
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