Uses of Class
com.milaboratory.primitivio.annotations.Serializable

Packages that use Serializable

Package	Description
com.milaboratory.core
com.milaboratory.core.alignment
com.milaboratory.core.alignment.batch
com.milaboratory.core.io.sequence
com.milaboratory.core.merger
com.milaboratory.core.mutations
com.milaboratory.core.sequence
com.milaboratory.core.tree

Uses of Serializable in com.milaboratory.core

Classes in com.milaboratory.core with annotations of type Serializable

Modifier and Type	Class and Description
class	Range This class represents a range of positions in a sequence (e.g.

Uses of Serializable in com.milaboratory.core.alignment

Classes in com.milaboratory.core.alignment with annotations of type Serializable

Modifier and Type	Class and Description
class	Alignment<S extends Sequence<S>>
interface	AlignmentScoring<S extends Sequence<S>> AlignmentScoring - interface which is to be implemented by any scoring system

Uses of Serializable in com.milaboratory.core.alignment.batch

Classes in com.milaboratory.core.alignment.batch with annotations of type Serializable

Modifier and Type	Interface and Description
interface	BatchAlignerWithBaseParameters

Uses of Serializable in com.milaboratory.core.io.sequence

Classes in com.milaboratory.core.io.sequence with annotations of type Serializable

Modifier and Type	Interface and Description
interface	SequenceRead

Uses of Serializable in com.milaboratory.core.merger

Classes in com.milaboratory.core.merger with annotations of type Serializable

Modifier and Type	Class and Description
class	MergerParameters

Uses of Serializable in com.milaboratory.core.mutations

Classes in com.milaboratory.core.mutations with annotations of type Serializable

Modifier and Type	Class and Description
class	Mutations<S extends Sequence<S>>

Uses of Serializable in com.milaboratory.core.sequence

Classes in com.milaboratory.core.sequence with annotations of type Serializable

Modifier and Type	Class and Description
class	Alphabet<S extends Sequence<S>> Interface for sequence letters alphabet (amino acid, nucleotide, etc.).
class	NSequenceWithQuality Container of nucleotide sequence with its quality.
class	Sequence<S extends Sequence<S>> Parent class for all types of sequences.
class	SequenceQuality Representation of nucleotide sequence quality based on phred quality scores.

Uses of Serializable in com.milaboratory.core.tree

Classes in com.milaboratory.core.tree with annotations of type Serializable

Modifier and Type	Class and Description
class	TreeSearchParameters