Uses of Interface
com.milaboratory.util.CanReportProgress

Packages that use CanReportProgress

Package	Description
com.milaboratory.core.clustering
com.milaboratory.core.io.sequence
com.milaboratory.core.io.sequence.fasta
com.milaboratory.core.io.sequence.fastq
com.milaboratory.primitivio
com.milaboratory.util

Uses of CanReportProgress in com.milaboratory.core.clustering

Classes in com.milaboratory.core.clustering that implement CanReportProgress

Modifier and Type	Class and Description
class	Clustering<T,S extends Sequence<S>>

Uses of CanReportProgress in com.milaboratory.core.io.sequence

Classes in com.milaboratory.core.io.sequence that implement CanReportProgress

Modifier and Type	Class and Description
class	AbstractMultiReader<R extends SequenceRead> Created by dbolotin on 23/06/14.
class	MultiReader
class	PairedReader Created by dbolotin on 23/06/14.

Uses of CanReportProgress in com.milaboratory.core.io.sequence.fasta

Classes in com.milaboratory.core.io.sequence.fasta that implement CanReportProgress

Modifier and Type	Class and Description
class	FastaReader<S extends Sequence<S>> Reads amino acid or nucleotide sequence from FASTA formatted file
class	FastaSequenceReaderWrapper Converts FastaReader<NucleotideSequence> to SingleReader.

Uses of CanReportProgress in com.milaboratory.core.io.sequence.fastq

Classes in com.milaboratory.core.io.sequence.fastq that implement CanReportProgress

Modifier and Type	Class and Description
class	PairedFastqReader Created by dbolotin on 23/06/14.
class	SingleFastqIndexer
class	SingleFastqReader

Uses of CanReportProgress in com.milaboratory.primitivio

Classes in com.milaboratory.primitivio that implement CanReportProgress

Modifier and Type	Class and Description
class	PipeReader<O>
class	PReader

Uses of CanReportProgress in com.milaboratory.util

Subinterfaces of CanReportProgress in com.milaboratory.util

Modifier and Type	Interface and Description
interface	CanReportProgressAndStage

Classes in com.milaboratory.util that implement CanReportProgress

Modifier and Type	Class and Description
class	ProgressAndStage

Methods in com.milaboratory.util that return CanReportProgress

Modifier and Type	Method and Description
static CanReportProgress	SmartProgressReporter.extractProgress(cc.redberry.pipe.util.CountingOutputPort<?> countingOutputPort, long size)
static CanReportProgress	SmartProgressReporter.extractProgress(cc.redberry.pipe.util.CountLimitingOutputPort<?> countLimitingOutputPort)
CanReportProgress	CountingInputStream.getProgressReporter(long totalSize)

Methods in com.milaboratory.util with parameters of type CanReportProgress

Modifier and Type	Method and Description
static void	SmartProgressReporter.startProgressReport(String prefix, CanReportProgress reporter)
static void	SmartProgressReporter.startProgressReport(String prefix, CanReportProgress reporter, PrintStream stream)

Constructors in com.milaboratory.util with parameters of type CanReportProgress

Constructor and Description
SmartProgressReporter(String prefix, CanReportProgress reporter)
SmartProgressReporter(String prefix, CanReportProgress reporter, PrintStream stream)