| Interface | Description |
|---|---|
| IBasedSegmentBuilder<S extends IBasedSegmentBuilder<S>> | |
| ISegmentBuilder<S extends ISegmentBuilder<S>> | |
| ISequenceBuilder<T extends ISequenceBuilder<T,S>,S extends CharSequence> | |
| SegmentOptimizer |
| Class | Description |
|---|---|
| BasedSegmentBuilder | |
| CharRecoveryOptimizer | |
| PlainSegmentBuilder | |
| RichSequenceBuilder |
A Builder for non based strings.
|
| Seg |
Representation of a segment part in a segment list for a sequence
it is a Range, either in the base sequence or in the out of base characters for the builder.
|
| SegmentBuilderBase<S extends SegmentBuilderBase<S>> | |
| SegmentedSequenceStats | |
| SegmentedSequenceStats.StatsEntry | |
| SegmentStats | |
| SequenceBuilder |
A Builder for Segmented BasedSequences
|
| StringSequenceBuilder |
A Builder for non based strings.
|
| Enum | Description |
|---|---|
| ISegmentBuilder.Options |
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