Uses of Class
com.wcohen.ss.abbvGapsHmm.AbbvGapsHMM.Transitions

Packages that use AbbvGapsHMM.Transitions

Package	Description
com.wcohen.ss.abbvGapsHmm

Uses of AbbvGapsHMM.Transitions in com.wcohen.ss.abbvGapsHmm

Methods in com.wcohen.ss.abbvGapsHmm that return AbbvGapsHMM.Transitions

Modifier and Type	Method and Description
static AbbvGapsHMM.Transitions	AbbvGapsHMM.Transitions.valueOf(String name) Returns the enum constant of this type with the specified name.
static AbbvGapsHMM.Transitions[]	AbbvGapsHMM.Transitions.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in com.wcohen.ss.abbvGapsHmm with parameters of type AbbvGapsHMM.Transitions

Modifier and Type	Method and Description
protected void	AbbvGapsHmmExpectationEvaluator.increaseCounter(AbbvGapsHMM.Transitions transition, double addition)
protected boolean	AbbvGapsHmmForwardEvaluator.transitionIsLegal(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected boolean	AbbvGapsHMMEvaluator.transitionIsLegal(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected boolean	AbbvGapsHmmBackwardsEvaluator.transitionIsLegal(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected void	AbbvGapsHmmForwardEvaluator.updateLegalOutgoingEdges(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected void	AbbvGapsHmmExpectationEvaluator.updateLegalOutgoingEdges(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected abstract void	AbbvGapsHMMEvaluator.updateLegalOutgoingEdges(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected void	AbbvGapsHmmBackwardsViterbiEvaluator.updateLegalOutgoingEdges(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected void	AbbvGapsHmmBackwardsEvaluator.updateLegalOutgoingEdges(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)
protected void	AbbvGapsHMMEvaluator.updateOutgoingEdges(int currS, int currL, AbbvGapsHMM.States currState, int prevS, int prevL, AbbvGapsHMM.States prevState, AbbvGapsHMM.Transitions transition, AbbvGapsHMM.Emissions emission)