de.bioforscher.singa.structure.algorithms.superimposition.affinity

Interface AffinityAlignment.AtomStep

All Known Implementing Classes:

AffinityAlignment.Builder

Enclosing class:

AffinityAlignment

public static interface AffinityAlignment.AtomStep

Method Summary

Modifier and Type	Method and Description
AffinityAlignment.ParameterStep	atomFilter(Predicate<Atom> atomFilter) Defines the StructuralEntityFilter.AtomFilter to be used for the computed alignments.
AffinityAlignment.ParameterStep	representationSchemeType(RepresentationSchemeType representationSchemeType) Defines a RepresentationSchemeType to be used for the computed alignments.
AffinityAlignment	run() Creates a new ConsensusAlignment and starts the calculation.

Method Detail

representationSchemeType

AffinityAlignment.ParameterStep representationSchemeType(RepresentationSchemeType representationSchemeType)

Defines a RepresentationSchemeType to be used for the computed alignments. This is exclusive to the definition of an StructuralEntityFilter.AtomFilter.

Parameters:

representationSchemeType - The RepresentationSchemeType to be used.

Returns:

The ConsensusBuilder.ParameterStep to define additional parameters.

atomFilter

AffinityAlignment.ParameterStep atomFilter(Predicate<Atom> atomFilter)

Defines the StructuralEntityFilter.AtomFilter to be used for the computed alignments. This is exclusive to the definition of a RepresentationSchemeType.

Parameters:

atomFilter - The StructuralEntityFilter.AtomFilter to be used.

Returns:

The ConsensusBuilder.ParameterStep to define additional parameters.

run

AffinityAlignment run()

Creates a new ConsensusAlignment and starts the calculation.

Returns:

A new ConsensusAlignment once calculation has finished.