de.bioforscher.singa.structure.algorithms.superimposition.affinity

Interface AffinityAlignment.ParameterStep

All Known Implementing Classes:

AffinityAlignment.Builder

Enclosing class:

AffinityAlignment

public static interface AffinityAlignment.ParameterStep

Method Summary

Modifier and Type	Method and Description
AffinityAlignment.ParameterStep	alignWithinClusters(boolean alignWithinClusters)
AffinityAlignment.ParameterStep	idealSuperimposition(boolean idealSuperimposition)
AffinityAlignment	run() Creates a new ConsensusAlignment and starts the calculation.

Method Detail

idealSuperimposition

AffinityAlignment.ParameterStep idealSuperimposition(boolean idealSuperimposition)

alignWithinClusters

AffinityAlignment.ParameterStep alignWithinClusters(boolean alignWithinClusters)

run

AffinityAlignment run()

Creates a new ConsensusAlignment and starts the calculation.

Returns:

A new ConsensusAlignment once calculation has finished.