Uses of Interface
de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.ParameterStep

Packages that use AffinityAlignment.ParameterStep

Package	Description
de.bioforscher.singa.structure.algorithms.superimposition.affinity

Uses of AffinityAlignment.ParameterStep in de.bioforscher.singa.structure.algorithms.superimposition.affinity

Classes in de.bioforscher.singa.structure.algorithms.superimposition.affinity that implement AffinityAlignment.ParameterStep

Modifier and Type	Class and Description
static class	AffinityAlignment.Builder

Methods in de.bioforscher.singa.structure.algorithms.superimposition.affinity that return AffinityAlignment.ParameterStep

Modifier and Type	Method and Description
AffinityAlignment.ParameterStep	AffinityAlignment.ParameterStep.alignWithinClusters(boolean alignWithinClusters)
AffinityAlignment.ParameterStep	AffinityAlignment.Builder.alignWithinClusters(boolean alignWithinClusters)
AffinityAlignment.ParameterStep	AffinityAlignment.AtomStep.atomFilter(Predicate<Atom> atomFilter) Defines the StructuralEntityFilter.AtomFilter to be used for the computed alignments.
AffinityAlignment.ParameterStep	AffinityAlignment.Builder.atomFilter(Predicate<Atom> atomFilter)
AffinityAlignment.ParameterStep	AffinityAlignment.ParameterStep.idealSuperimposition(boolean idealSuperimposition)
AffinityAlignment.ParameterStep	AffinityAlignment.Builder.idealSuperimposition(boolean idealSuperimposition)
AffinityAlignment.ParameterStep	AffinityAlignment.AtomStep.representationSchemeType(RepresentationSchemeType representationSchemeType) Defines a RepresentationSchemeType to be used for the computed alignments.
AffinityAlignment.ParameterStep	AffinityAlignment.Builder.representationSchemeType(RepresentationSchemeType representationSchemeType)