de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Class Fit3DAlignmentBatch

java.lang.Object

de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DAlignmentBatch

All Implemented Interfaces:

Fit3D

public class Fit3DAlignmentBatch
extends Object
implements Fit3D

A parallel version of the Fit3DAlignment for substructure search in a set of target structures.

Author:

fk

Method Summary

Modifier and Type	Method and Description
double	getFraction() Returns the fraction of aligned residues, which is always 1.0 for this kind of alignment.
List<Fit3DMatch>	getMatches() Returns all matches of this Fit3D batch calculation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3D

getAlignmentString, getPsScore, getXieScore, writeMatches, writeMatches, writeSummaryFile

Method Detail

getMatches

public List<Fit3DMatch> getMatches()

Returns all matches of this Fit3D batch calculation.

Specified by:

getMatches in interface Fit3D

Returns:

The matches in all target structures.

getFraction

public double getFraction()

Returns the fraction of aligned residues, which is always 1.0 for this kind of alignment.

Specified by:

getFraction in interface Fit3D

Returns:

The fractions of matches that were aligned.