de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Interface Fit3DBuilder.BatchParameterStep

All Known Implementing Classes:

Fit3DBuilder.Builder

Enclosing class:

Fit3DBuilder

public static interface Fit3DBuilder.BatchParameterStep

Method Summary

Modifier and Type	Method and Description
Fit3DBuilder.AtomStep	limitedParallelism(int limitedParallelism) Defines for a batch search the level of parallelism (number of cores) that should be used by Fit3D.
Fit3DBuilder.AtomStep	maximalParallelism() Allows Fit3D in search mode to use all available cores for processing.
Fit3DBuilder.BatchParameterStep	skipAlphaCarbonTargets() Sets the option to skip all targets that consist of only alpha carbon atoms to avoid a lot of noise in the results.
Fit3DBuilder.BatchParameterStep	skipBackboneTargets() Sets the option to skip all targets that consist of only backbone atoms to avoid a lot of noise in the results.

Method Detail

limitedParallelism

Fit3DBuilder.AtomStep limitedParallelism(int limitedParallelism)

Defines for a batch search the level of parallelism (number of cores) that should be used by Fit3D.

Parameters:

limitedParallelism - The desired level of parallelism.

Returns:

The Fit3DBuilder.AtomStep to define optional restrictions on Atoms.

maximalParallelism

Fit3DBuilder.AtomStep maximalParallelism()

Allows Fit3D in search mode to use all available cores for processing.

Returns:

The Fit3DBuilder.AtomStep to define optional restrictions on Atoms.

skipAlphaCarbonTargets

Fit3DBuilder.BatchParameterStep skipAlphaCarbonTargets()

Sets the option to skip all targets that consist of only alpha carbon atoms to avoid a lot of noise in the results.

Returns:

The Fit3DBuilder.BatchParameterStep that can be used to define optional parameters.

skipBackboneTargets

Fit3DBuilder.BatchParameterStep skipBackboneTargets()

Sets the option to skip all targets that consist of only backbone atoms to avoid a lot of noise in the results.

Returns:

The Fit3DBuilder.BatchParameterStep that can be used to define optional parameters.