Uses of Interface
de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.ParameterStep

Packages that use Fit3DBuilder.ParameterStep

Package	Description
de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Uses of Fit3DBuilder.ParameterStep in de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Classes in de.bioforscher.singa.structure.algorithms.superimposition.fit3d that implement Fit3DBuilder.ParameterStep

Modifier and Type	Class and Description
static class	Fit3DBuilder.Builder

Methods in de.bioforscher.singa.structure.algorithms.superimposition.fit3d that return Fit3DBuilder.ParameterStep

Modifier and Type	Method and Description
Fit3DBuilder.ParameterStep	Fit3DBuilder.AtomStep.atomFilter(Predicate<Atom> atomFilter) Defines a StructuralEntityFilter.AtomFilter filter to be used for the Fit3D alignment (e.g.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.atomFilter(Predicate<Atom> atomFilter)
Fit3DBuilder.ParameterStep	Fit3DBuilder.ParameterStep.distanceTolerance(double distanceTolerance) Defines the distance tolerance that is accepted when extracting local environments.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.distanceTolerance(double distanceTolerance)
Fit3DBuilder.ParameterStep	Fit3DBuilder.ParameterStep.filterEnvironments() Enables pre-filtering of extracted environments, i.e.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.filterEnvironments()
Fit3DBuilder.ParameterStep	Fit3DBuilder.ParameterStep.mapECNumbers() Enables mapping of each chain of a Fit3DMatch to an ECNumber using the SIFTS project.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.mapECNumbers()
Fit3DBuilder.ParameterStep	Fit3DBuilder.ParameterStep.mapPfamIdentifiers() Enables mapping of each chain of a Fit3DMatch to a PfamIdentifier using the SIFTS project.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.mapPfamIdentifiers()
Fit3DBuilder.ParameterStep	Fit3DBuilder.ParameterStep.mapUniProtIdentifiers() Enables mapping of each chain of a Fit3DMatch to a UniProtIdentifier using the SIFTS project.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.mapUniProtIdentifiers()
Fit3DBuilder.ParameterStep	Fit3DBuilder.AtomStep.representationScheme(RepresentationSchemeType representationSchemeType) Defines a single point RepresentationScheme that should be used to represent single residues.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.representationScheme(RepresentationSchemeType representationSchemeType)
Fit3DBuilder.ParameterStep	Fit3DBuilder.ParameterStep.rmsdCutoff(double rmsdCutoff) Defines the RMSD cutoff up to which matches should be reported.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.rmsdCutoff(double rmsdCutoff)
Fit3DBuilder.ParameterStep	Fit3DBuilder.ParameterStep.statisticalModel(StatisticalModel statisticalModel) Adds the specified StatisticalModel to the search to calculate significance of matches.
Fit3DBuilder.ParameterStep	Fit3DBuilder.Builder.statisticalModel(StatisticalModel statisticalModel)