Uses of Interface
de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.SiteParameterConfigurationStep

Packages that use Fit3DBuilder.SiteParameterConfigurationStep

Package	Description
de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Uses of Fit3DBuilder.SiteParameterConfigurationStep in de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Classes in de.bioforscher.singa.structure.algorithms.superimposition.fit3d that implement Fit3DBuilder.SiteParameterConfigurationStep

Modifier and Type	Class and Description
static class	Fit3DBuilder.Builder

Methods in de.bioforscher.singa.structure.algorithms.superimposition.fit3d that return Fit3DBuilder.SiteParameterConfigurationStep

Modifier and Type	Method and Description
Fit3DBuilder.SiteParameterConfigurationStep	Fit3DBuilder.SiteParameterConfigurationStep.cutoffScore(double cutoffScore) The cutoff score that should be used when extending the site alignment.
Fit3DBuilder.SiteParameterConfigurationStep	Fit3DBuilder.Builder.cutoffScore(double cutoffScore)
Fit3DBuilder.SiteParameterConfigurationStep	Fit3DBuilder.SiteParameterConfigurationStep.substitutionMatrix(SubstitutionMatrix substitutionMatrix) The SubstitutionMatrix to be used to calculate the Xie score.
Fit3DBuilder.SiteParameterConfigurationStep	Fit3DBuilder.Builder.substitutionMatrix(SubstitutionMatrix substitutionMatrix)
Fit3DBuilder.SiteParameterConfigurationStep	Fit3DBuilder.SiteStep.vs(StructuralMotif site) Defines the second site for the pairwise site alignment.
Fit3DBuilder.SiteParameterConfigurationStep	Fit3DBuilder.Builder.vs(StructuralMotif site2)