de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations

Class SideChainCentroidRepresentationScheme

java.lang.Object

de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.AbstractRepresentationScheme

de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.SideChainCentroidRepresentationScheme

All Implemented Interfaces:

RepresentationScheme

public class SideChainCentroidRepresentationScheme
extends AbstractRepresentationScheme

An implementation to represent a given LeafSubstructure by its sidechain centroid. This is only available for AminoAcids. For glycine this defaults to BetaCarbonRepresentationScheme.

Author:

fk

Field Summary

Fields inherited from class de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.AbstractRepresentationScheme

logger

Constructor Summary

Constructors

Constructor and Description
SideChainCentroidRepresentationScheme()

Method Summary

Modifier and Type	Method and Description
Atom	determineRepresentingAtom(LeafSubstructure<?> leafSubstructure) Determined the representing Atom for the concrete implementation.
RepresentationSchemeType	getType() Returns the actual RepresentationSchemeType of this RepresentationScheme.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SideChainCentroidRepresentationScheme

public SideChainCentroidRepresentationScheme()

Method Detail

determineRepresentingAtom

public Atom determineRepresentingAtom(LeafSubstructure<?> leafSubstructure)

Description copied from interface: RepresentationScheme

Determined the representing Atom for the concrete implementation.

Parameters:

leafSubstructure - The LeafSubstructure for which the one atom representation should be calculated.

Returns:

The one-atom representation of the given LeafSubstructure.

getType

public RepresentationSchemeType getType()

Description copied from interface: RepresentationScheme

Returns the actual RepresentationSchemeType of this RepresentationScheme.

Returns:

The actual type of this RepresentationScheme.