Uses of Interface
de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationScheme

Packages that use RepresentationScheme

Package	Description
de.bioforscher.singa.structure.algorithms.superimposition
de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations

Uses of RepresentationScheme in de.bioforscher.singa.structure.algorithms.superimposition

Methods in de.bioforscher.singa.structure.algorithms.superimposition with parameters of type RepresentationScheme

Modifier and Type	Method and Description
static SubstructureSuperimposition	SubstructureSuperimposer.calculateIdealSubstructureSuperimposition(LeafSubstructureContainer reference, LeafSubstructureContainer candidate, RepresentationScheme representationScheme)
static SubstructureSuperimposition	SubstructureSuperimposer.calculateIdealSubstructureSuperimposition(List<LeafSubstructure<?>> reference, List<LeafSubstructure<?>> candidate, RepresentationScheme representationScheme)
static SubstructureSuperimposition	SubstructureSuperimposer.calculateKuhnMunkresSubstructureSuperimposition(LeafSubstructureContainer reference, LeafSubstructureContainer candidate, RepresentationScheme representationScheme, SubstitutionMatrix substitutionMatrix, boolean considerExchanges)
static SubstructureSuperimposition	SubstructureSuperimposer.calculateKuhnMunkresSubstructureSuperimposition(List<LeafSubstructure<?>> reference, List<LeafSubstructure<?>> candidate, RepresentationScheme representationScheme, SubstitutionMatrix substitutionMatrix, boolean considerExchanges)
static SubstructureSuperimposition	SubstructureSuperimposer.calculateSubstructureSuperimposition(LeafSubstructureContainer reference, LeafSubstructureContainer candidate, RepresentationScheme representationScheme)
static SubstructureSuperimposition	SubstructureSuperimposer.calculateSubstructureSuperimposition(List<LeafSubstructure<?>> reference, List<LeafSubstructure<?>> candidate, RepresentationScheme representationScheme)

Uses of RepresentationScheme in de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations

Classes in de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations that implement RepresentationScheme

Modifier and Type	Class and Description
class	AbstractRepresentationScheme This abstract implementation provide a fallback solution to compute the centroid of a LeafSubstructure, iff the specified representation fails.
class	AlphaCarbonRepresentationScheme An implementation to represent a given LeafSubstructure by its alpha carbon.
class	BetaCarbonRepresentationScheme An implementation to represent a given LeafSubstructure by its beta carbon.
class	CentroidRepresentationScheme An implementation to represent a given LeafSubstructure by its centroid EXCLUDING hydrogen.
class	LastHeavySidechainRepresentationScheme An implementation to represent a given LeafSubstructure by its last heavy sidechain atom (the atom most far from the alpha carbon).
class	SideChainCentroidRepresentationScheme An implementation to represent a given LeafSubstructure by its sidechain centroid.

Methods in de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations that return RepresentationScheme

Modifier and Type	Method and Description
static RepresentationScheme	RepresentationSchemeFactory.createRepresentationScheme(RepresentationSchemeType representationSchemeType) Creates a RepresentationScheme for the given RepresentationSchemeType.