de.bioforscher.singa.structure.algorithms.superimposition.scores

Class XieScore

java.lang.Object

de.bioforscher.singa.structure.algorithms.superimposition.scores.XieScore

public class XieScore
extends Object

An implementation of the score described in:

 Xie, L., Xie, L., and Bourne, P. E. (2009). A unified statistical model to support local sequence order independent
 similarity searching for ligand-binding sites and its application to genome-based drug discovery.
 Bioinformatics, 25(12), i305-i312.
 

Author:

fk

Method Summary

Modifier and Type	Method and Description
double	getNormalizedScore()
double	getScore()
double	getSignificance()
static XieScore	of(SubstitutionMatrix substitutionMatrix, SubstructureSuperimposition substructureSuperimposition)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

of

public static XieScore of(SubstitutionMatrix substitutionMatrix,
                          SubstructureSuperimposition substructureSuperimposition)

toString

public String toString()

Overrides:

toString in class Object

getScore

public double getScore()

getSignificance

public double getSignificance()

getNormalizedScore

public double getNormalizedScore()