Uses of Class
de.bioforscher.singa.structure.model.families.AminoAcidFamily

Packages that use AminoAcidFamily

Package	Description
de.bioforscher.singa.structure.model.families
de.bioforscher.singa.structure.model.oak

Uses of AminoAcidFamily in de.bioforscher.singa.structure.model.families

Methods in de.bioforscher.singa.structure.model.families that return AminoAcidFamily

Modifier and Type	Method and Description
static AminoAcidFamily	AminoAcidFamily.valueOf(String name) Returns the enum constant of this type with the specified name.
static AminoAcidFamily[]	AminoAcidFamily.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in de.bioforscher.singa.structure.model.families that return types with arguments of type AminoAcidFamily

Modifier and Type	Method and Description
static Optional<AminoAcidFamily>	AminoAcidFamily.getAminoAcidTypeByOneLetterCode(char oneLetterCode)
static Optional<AminoAcidFamily>	AminoAcidFamily.getAminoAcidTypeByOneLetterCode(String oneLetterCode)
static Optional<AminoAcidFamily>	AminoAcidFamily.getAminoAcidTypeByThreeLetterCode(String threeLetterCode)
EnumSet<AminoAcidFamily>	MatcherFamily.getMembers()

Methods in de.bioforscher.singa.structure.model.families with parameters of type AminoAcidFamily

Modifier and Type	Method and Description
boolean	AminoAcidFamily.containsExpectedAtoms(List<Atom> atoms, AminoAcidFamily aminoAcidFamily) Returns true if the set of AtomFilter contains only Atom names, that can occur in the given residue type.

Uses of AminoAcidFamily in de.bioforscher.singa.structure.model.oak

Methods in de.bioforscher.singa.structure.model.oak with parameters of type AminoAcidFamily

Modifier and Type	Method and Description
void	StructuralMotif.addExchangeableFamily(LeafIdentifier leafIdentifier, AminoAcidFamily aminoAcidFamily) For a given LeafIdentifier a possible exchange is added.
void	StructuralMotif.addExchangeableFamilyToAll(AminoAcidFamily aminoAcidFamily) Assigns an AminoAcidFamily to all members of this motif as exchange.
static OakAminoAcid	LeafSubstructureFactory.createAminoAcidFromAtoms(LeafIdentifier leafIdentifier, AminoAcidFamily aminoAcidFamily, Map<String,OakAtom> atoms, StructureParserOptions options)

Constructors in de.bioforscher.singa.structure.model.oak with parameters of type AminoAcidFamily

Constructor and Description
OakAminoAcid(LeafIdentifier leafIdentifier, AminoAcidFamily family)
OakAminoAcid(LeafIdentifier identifer, AminoAcidFamily aminoAcidFamily, String threeLetterCode)