Uses of Class
de.bioforscher.singa.structure.model.families.NucleotideFamily

Packages that use NucleotideFamily

Package	Description
de.bioforscher.singa.structure.model.families
de.bioforscher.singa.structure.model.oak

Uses of NucleotideFamily in de.bioforscher.singa.structure.model.families

Methods in de.bioforscher.singa.structure.model.families that return NucleotideFamily

Modifier and Type	Method and Description
static NucleotideFamily	NucleotideFamily.valueOf(String name) Returns the enum constant of this type with the specified name.
static NucleotideFamily[]	NucleotideFamily.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in de.bioforscher.singa.structure.model.families that return types with arguments of type NucleotideFamily

Modifier and Type	Method and Description
static Optional<NucleotideFamily>	NucleotideFamily.getNucleotide(char nucleotide)
static Optional<NucleotideFamily>	NucleotideFamily.getNucleotideByThreeLetterCode(String threeLetterCode)

Uses of NucleotideFamily in de.bioforscher.singa.structure.model.oak

Methods in de.bioforscher.singa.structure.model.oak with parameters of type NucleotideFamily

Modifier and Type	Method and Description
void	StructuralMotif.addExchangeableFamily(LeafIdentifier leafIdentifier, NucleotideFamily nucleotideFamily) For a given LeafIdentifier a possible exchange is added.
void	StructuralMotif.addExchangeableFamilyToAll(NucleotideFamily nucleotideFamily) Assigns an NucleotideFamily to all members of this motif as exchange.
static OakNucleotide	LeafSubstructureFactory.createNucleotideFromAtoms(LeafIdentifier leafIdentifier, NucleotideFamily nucleotideFamily, Map<String,OakAtom> atoms, StructureParserOptions options)

Constructors in de.bioforscher.singa.structure.model.oak with parameters of type NucleotideFamily

Constructor and Description
OakNucleotide(LeafIdentifier leafIdentifier, NucleotideFamily family)
OakNucleotide(LeafIdentifier identifer, NucleotideFamily nucleotideFamily, String threeLetterCode)