Uses of Interface
de.bioforscher.singa.structure.model.families.StructuralFamily

Packages that use StructuralFamily

Package	Description
de.bioforscher.singa.structure.algorithms.superimposition.scores
de.bioforscher.singa.structure.model.families
de.bioforscher.singa.structure.model.interfaces
de.bioforscher.singa.structure.model.mmtf
de.bioforscher.singa.structure.model.oak

Uses of StructuralFamily in de.bioforscher.singa.structure.algorithms.superimposition.scores

Methods in de.bioforscher.singa.structure.algorithms.superimposition.scores that return types with arguments of type StructuralFamily

Modifier and Type	Method and Description
LabeledSymmetricMatrix<StructuralFamily>	SubstitutionMatrix.getMatrix()
LabeledSymmetricMatrix<StructuralFamily>	SubstitutionMatrix.toCostMatrix()

Uses of StructuralFamily in de.bioforscher.singa.structure.model.families

Classes in de.bioforscher.singa.structure.model.families that implement StructuralFamily

Modifier and Type	Class and Description
class	AminoAcidFamily A AminoAcidFamily contains the general information of a type of amino acid.
class	LigandFamily
class	MatcherFamily This is a StructuralFamily that groups others.
class	NucleotideFamily

Uses of StructuralFamily in de.bioforscher.singa.structure.model.interfaces

Classes in de.bioforscher.singa.structure.model.interfaces with type parameters of type StructuralFamily

Modifier and Type	Interface and Description
interface	LeafSubstructure<FamilyType extends StructuralFamily> A leaf substructure is a collection of atoms with meta data assigned to it.

Uses of StructuralFamily in de.bioforscher.singa.structure.model.mmtf

Classes in de.bioforscher.singa.structure.model.mmtf with type parameters of type StructuralFamily

Modifier and Type	Class and Description
class	MmtfLeafSubstructure<FamilyType extends StructuralFamily> The implementation of LeafSubstructure for mmtf structures.

Fields in de.bioforscher.singa.structure.model.mmtf declared as StructuralFamily

Modifier and Type	Field and Description
protected FamilyType	MmtfLeafSubstructure.family The structural family of this entity

Uses of StructuralFamily in de.bioforscher.singa.structure.model.oak

Classes in de.bioforscher.singa.structure.model.oak with type parameters of type StructuralFamily

Modifier and Type	Interface and Description
interface	Exchangeable<FamilyType extends StructuralFamily> Exchangeable defines an entity that is exchangeable in terms of mapping another label or a set of other labels to that entity.
class	OakLeafSubstructure<FamilyType extends StructuralFamily>

Methods in de.bioforscher.singa.structure.model.oak with parameters of type StructuralFamily

Modifier and Type	Method and Description
static OakLeafSubstructure<?>	LeafSubstructureFactory.createLeafSubstructure(LeafIdentifier leafIdentifier, StructuralFamily family)