de.bioforscher.singa.structure.model.identifiers

Class LeafIdentifier

java.lang.Object

de.bioforscher.singa.structure.model.identifiers.LeafIdentifier

All Implemented Interfaces:

Comparable<LeafIdentifier>

public class LeafIdentifier
extends Object
implements Comparable<LeafIdentifier>

The leaf identifier consists of the PDB identifer, the model identifier, the chain identifier, the serial of a leaf substructure and optionally its insertion code.

Author:

cl

Field Summary

Fields

Modifier and Type	Field and Description
static char	DEFAULT_ALTERNATIVE_POSITION_CODE
static String	DEFAULT_CHAIN_IDENTIFIER
static char	DEFAULT_INSERTION_CODE
static LeafIdentifier	DEFAULT_LEAF_IDENTIFIER
static int	DEFAULT_MODEL_IDENTIFIER
static String	DEFAULT_PDB_IDENTIFIER

Constructor Summary

Constructors

Constructor and Description
LeafIdentifier(int serial)
LeafIdentifier(String chainIdentifer, int serial)
LeafIdentifier(String chainIdentifier, int serial, char insertionCode)
LeafIdentifier(String pdbIdentifer, int modelIdentifer, String chainIdentifer, int serial)
LeafIdentifier(String pdbIdentifer, int modelIdentifer, String chainIdentifer, int serial, char insertionCode)

Method Summary

Modifier and Type	Method and Description
int	compareTo(LeafIdentifier o)
boolean	equals(Object o)
static LeafIdentifier	fromSimpleString(String simpleString) Constructs a LeafIdentifier from the given simple string.
String	getChainIdentifier()
char	getInsertionCode()
int	getModelIdentifier()
String	getPdbIdentifier()
int	getSerial()
int	hashCode()
String	toSimpleString() Returns a simple version of this LeafIdentifier (e.g.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

DEFAULT_PDB_IDENTIFIER

public static final String DEFAULT_PDB_IDENTIFIER

See Also:

Constant Field Values

DEFAULT_MODEL_IDENTIFIER

public static final int DEFAULT_MODEL_IDENTIFIER

See Also:

Constant Field Values

DEFAULT_CHAIN_IDENTIFIER

public static final String DEFAULT_CHAIN_IDENTIFIER

See Also:

Constant Field Values

DEFAULT_INSERTION_CODE

public static final char DEFAULT_INSERTION_CODE

See Also:

Constant Field Values

DEFAULT_ALTERNATIVE_POSITION_CODE

public static final char DEFAULT_ALTERNATIVE_POSITION_CODE

See Also:

Constant Field Values

DEFAULT_LEAF_IDENTIFIER

public static final LeafIdentifier DEFAULT_LEAF_IDENTIFIER

Constructor Detail

LeafIdentifier

public LeafIdentifier(String pdbIdentifer,
                      int modelIdentifer,
                      String chainIdentifer,
                      int serial,
                      char insertionCode)

LeafIdentifier

public LeafIdentifier(String pdbIdentifer,
                      int modelIdentifer,
                      String chainIdentifer,
                      int serial)

LeafIdentifier

public LeafIdentifier(String chainIdentifier,
                      int serial,
                      char insertionCode)

LeafIdentifier

public LeafIdentifier(String chainIdentifer,
                      int serial)

LeafIdentifier

public LeafIdentifier(int serial)

Method Detail

fromSimpleString

public static LeafIdentifier fromSimpleString(String simpleString)

Constructs a LeafIdentifier from the given simple string. Only chain-ID, residue number and optional insertion code is required.

Parameters:

simpleString - The identifier in string format (e.g. A-62 or A-62B).

Returns:

The LeafIdentifier.

getPdbIdentifier

public String getPdbIdentifier()

getModelIdentifier

public int getModelIdentifier()

getChainIdentifier

public String getChainIdentifier()

getSerial

public int getSerial()

getInsertionCode

public char getInsertionCode()

compareTo

public int compareTo(LeafIdentifier o)

Specified by:

compareTo in interface Comparable<LeafIdentifier>

toString

public String toString()

Overrides:

toString in class Object

toSimpleString

public String toSimpleString()

Returns a simple version of this LeafIdentifier (e.g. A-62 or A-62B).

Returns:

The simple string version.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object