Uses of Interface
de.bioforscher.singa.structure.model.interfaces.AminoAcid

Packages that use AminoAcid

Package	Description
de.bioforscher.singa.structure.model.families
de.bioforscher.singa.structure.model.interfaces
de.bioforscher.singa.structure.model.mmtf
de.bioforscher.singa.structure.model.oak
de.bioforscher.singa.structure.parser.pdb.structures

Uses of AminoAcid in de.bioforscher.singa.structure.model.families

Methods in de.bioforscher.singa.structure.model.families that return AminoAcid

Modifier and Type	Method and Description
AminoAcid	AminoAcidFamily.getPrototype() Returns a prototype of the AminoAcid that are deposited in the project resources.

Uses of AminoAcid in de.bioforscher.singa.structure.model.interfaces

Methods in de.bioforscher.singa.structure.model.interfaces that return types with arguments of type AminoAcid

Modifier and Type	Method and Description
default List<AminoAcid>	LeafSubstructureContainer.getAllAminoAcids() Returns all AminoAcids.
default Optional<AminoAcid>	LeafSubstructureContainer.getAminoAcid(LeafIdentifier leafIdentifier) Returns an Optional of the AminoAcid with the given identifier.

Uses of AminoAcid in de.bioforscher.singa.structure.model.mmtf

Classes in de.bioforscher.singa.structure.model.mmtf that implement AminoAcid

Modifier and Type	Class and Description
class	MmtfAminoAcid The implementation of AminoAcids for mmtf structures.

Methods in de.bioforscher.singa.structure.model.mmtf that return AminoAcid

Modifier and Type	Method and Description
AminoAcid	MmtfAminoAcid.getCopy()

Uses of AminoAcid in de.bioforscher.singa.structure.model.oak

Classes in de.bioforscher.singa.structure.model.oak that implement AminoAcid

Modifier and Type	Class and Description
class	OakAminoAcid

Methods in de.bioforscher.singa.structure.model.oak with parameters of type AminoAcid

Modifier and Type	Method and Description
static Atom	AminoAcids.createVirtualCBAtom(AminoAcid aminoAcid) This creates a virtual beta carbon for glycine by superimposing alanine.

Uses of AminoAcid in de.bioforscher.singa.structure.parser.pdb.structures

Methods in de.bioforscher.singa.structure.parser.pdb.structures that return AminoAcid

Modifier and Type	Method and Description
AminoAcid	StructureSelector.AminoAcidAtomStep.selectAminoAcid()
AminoAcid	StructureSelector.Selector.selectAminoAcid()

Methods in de.bioforscher.singa.structure.parser.pdb.structures with parameters of type AminoAcid

Modifier and Type	Method and Description
static StructureSelector.AtomStep	StructureSelector.selectFrom(AminoAcid aminoAcid)

Constructors in de.bioforscher.singa.structure.parser.pdb.structures with parameters of type AminoAcid

Constructor and Description
Selector(AminoAcid aminoAcid)