Uses of Interface
de.bioforscher.singa.structure.model.interfaces.Chain

Packages that use Chain

Package	Description
de.bioforscher.singa.structure.model.interfaces
de.bioforscher.singa.structure.model.mmtf
de.bioforscher.singa.structure.model.oak
de.bioforscher.singa.structure.parser.pdb.structures
de.bioforscher.singa.structure.parser.pfam
de.bioforscher.singa.structure.parser.plip

Uses of Chain in de.bioforscher.singa.structure.model.interfaces

Methods in de.bioforscher.singa.structure.model.interfaces that return Chain

Modifier and Type	Method and Description
Chain	Chain.getCopy() Returns a copy of this chain.
Chain	ChainContainer.getFirstChain() Returns the first Chain.

Methods in de.bioforscher.singa.structure.model.interfaces that return types with arguments of type Chain

Modifier and Type	Method and Description
List<Chain>	ChainContainer.getAllChains() Returns all Chains.
Optional<Chain>	Structure.getChain(int modelIdentifier, String chainIdentifier) Returns an Optional of the Chain with the given identifier from the model with the given identifier.
Optional<Chain>	Model.getChain(String chainIdentifier) Returns an Optional of the Chain with the given identifier.

Uses of Chain in de.bioforscher.singa.structure.model.mmtf

Classes in de.bioforscher.singa.structure.model.mmtf that implement Chain

Modifier and Type	Class and Description
class	MmtfChain The implementation of Chain for mmtf structures.

Methods in de.bioforscher.singa.structure.model.mmtf that return Chain

Modifier and Type	Method and Description
Chain	MmtfChain.getCopy()
Chain	MmtfModel.getFirstChain()
Chain	MmtfStructure.getFirstChain()

Methods in de.bioforscher.singa.structure.model.mmtf that return types with arguments of type Chain

Modifier and Type	Method and Description
List<Chain>	MmtfModel.getAllChains()
List<Chain>	MmtfStructure.getAllChains()
Optional<Chain>	MmtfStructure.getChain(int modelIdentifier, String chainIdentifier)
Optional<Chain>	MmtfModel.getChain(String chainIdentifier)

Uses of Chain in de.bioforscher.singa.structure.model.oak

Classes in de.bioforscher.singa.structure.model.oak that implement Chain

Modifier and Type	Class and Description
class	OakChain

Methods in de.bioforscher.singa.structure.model.oak that return Chain

Modifier and Type	Method and Description
Chain	OakStructure.getFirstChain()
Chain	OakModel.getFirstChain()

Methods in de.bioforscher.singa.structure.model.oak that return types with arguments of type Chain

Modifier and Type	Method and Description
List<Chain>	OakStructure.getAllChains()
List<Chain>	OakModel.getAllChains()
Optional<Chain>	OakStructure.getChain(int modelIdentifier, String chainIdentifier)
Optional<Chain>	OakModel.getChain(String chainIdentifier)
static Predicate<Chain>	StructuralEntityFilter.ChainFilter.isInChain(String chainIdentifier)

Uses of Chain in de.bioforscher.singa.structure.parser.pdb.structures

Methods in de.bioforscher.singa.structure.parser.pdb.structures that return Chain

Modifier and Type	Method and Description
Chain	StructureSelector.ResidueStep.selectChain()
Chain	StructureSelector.Selector.selectChain()

Methods in de.bioforscher.singa.structure.parser.pdb.structures with parameters of type Chain

Modifier and Type	Method and Description
static StructureSelector.ResidueStep	StructureSelector.selectFrom(Chain chain)

Constructors in de.bioforscher.singa.structure.parser.pdb.structures with parameters of type Chain

Constructor and Description
Selector(Chain chain)

Uses of Chain in de.bioforscher.singa.structure.parser.pfam

Methods in de.bioforscher.singa.structure.parser.pfam that return types with arguments of type Chain

Modifier and Type	Method and Description
List<Chain>	PfamParser.DomainStep.chains() Parse all chains carrying one Pfam domain with the desired Pfam-ID.
List<Chain>	PfamParser.Builder.chains()
List<Chain>	PfamParser.getChains()

Uses of Chain in de.bioforscher.singa.structure.parser.plip

Methods in de.bioforscher.singa.structure.parser.plip with parameters of type Chain

Modifier and Type	Method and Description
static PlipShellGenerator	PlipShellGenerator.getInteractionShellsForLigand(Chain chain, LeafSubstructure<?> reference, InteractionContainer interChainInteractions, InteractionContainer referenceInteractions)