Uses of Interface
de.bioforscher.singa.structure.model.interfaces.Structure

Packages that use Structure

Package	Description
de.bioforscher.singa.structure.model.interfaces
de.bioforscher.singa.structure.model.mmtf
de.bioforscher.singa.structure.model.oak
de.bioforscher.singa.structure.parser.pdb.structures

Uses of Structure in de.bioforscher.singa.structure.model.interfaces

Methods in de.bioforscher.singa.structure.model.interfaces that return Structure

Modifier and Type	Method and Description
Structure	Structure.getCopy() Returns a copy of this structure.

Uses of Structure in de.bioforscher.singa.structure.model.mmtf

Classes in de.bioforscher.singa.structure.model.mmtf that implement Structure

Modifier and Type	Class and Description
class	MmtfStructure The implementation of Structures for mmtf structures.

Methods in de.bioforscher.singa.structure.model.mmtf that return Structure

Modifier and Type	Method and Description
Structure	MmtfStructure.getCopy()

Uses of Structure in de.bioforscher.singa.structure.model.oak

Classes in de.bioforscher.singa.structure.model.oak that implement Structure

Modifier and Type	Class and Description
class	OakStructure

Methods in de.bioforscher.singa.structure.model.oak that return Structure

Modifier and Type	Method and Description
Structure	OakStructure.getCopy()

Methods in de.bioforscher.singa.structure.model.oak with parameters of type Structure

Modifier and Type	Method and Description
static StructuralMotif	StructuralMotif.fromLeafIdentifiers(Structure structure, List<LeafIdentifier> leafIdentifiers) Creates a StructuralMotif by extracting the given residues identified by a list of LeafIdentifiers.
static boolean	Structures.isAlphaCarbonStructure(Structure structure) Returns true iff the given Structure consists only of alpha carbon atoms (this may include hydrogen atoms).
static boolean	Structures.isBackboneStructure(Structure structure) Returns true iff the given Structure consists only of backbone atoms (this may include beta carbon and hydrogen atoms).

Uses of Structure in de.bioforscher.singa.structure.parser.pdb.structures

Methods in de.bioforscher.singa.structure.parser.pdb.structures that return Structure

Modifier and Type	Method and Description
Structure	StructureParser.MultiParser.next()
Structure	StructureParser.SingleChainStep.parse() Returns the parsed structure, skipping user contact with parsing.
Structure	StructureParser.SingleParser.parse() Parses the structure as specifies during teh selection process and returns is,

Methods in de.bioforscher.singa.structure.parser.pdb.structures that return types with arguments of type Structure

Modifier and Type	Method and Description
List<Structure>	StructureParser.MultiChainStep.parse() Returns a list of parsed structures, skipping user contact with parsing.
List<Structure>	StructureParser.MultiParser.parse() Parses all structures that are queued for this StructureParser.MultiParser.

Methods in de.bioforscher.singa.structure.parser.pdb.structures with parameters of type Structure

Modifier and Type	Method and Description
static String	StructureRepresentation.composePdbRepresentation(Structure structure) Creates a pdb representation of the given structure.
static StructureSelector.StructuralModelStep	StructureSelector.selectFrom(Structure structure)

Constructors in de.bioforscher.singa.structure.parser.pdb.structures with parameters of type Structure

Constructor and Description
Selector(Structure structure)