de.bioforscher.singa.structure.model.mmtf

Class MmtfAminoAcid

java.lang.Object

de.bioforscher.singa.structure.model.mmtf.MmtfLeafSubstructure<AminoAcidFamily>

de.bioforscher.singa.structure.model.mmtf.MmtfAminoAcid

All Implemented Interfaces:

AminoAcid, AtomContainer, LeafSubstructure<AminoAcidFamily>, Exchangeable<AminoAcidFamily>

public class MmtfAminoAcid
extends MmtfLeafSubstructure<AminoAcidFamily>
implements AminoAcid

The implementation of AminoAcids for mmtf structures.

Author:

cl

Field Summary

Fields inherited from class de.bioforscher.singa.structure.model.mmtf.MmtfLeafSubstructure

exchangeableFamilies, family

Method Summary

Modifier and Type	Method and Description
AminoAcid	getCopy() Returns a copy of this LeafSubstructure.
Vector3D	getPosition()
boolean	isAnnotatedAsHeteroAtom()

Methods inherited from class de.bioforscher.singa.structure.model.mmtf.MmtfLeafSubstructure

containsAtomWithName, equals, getAllAtoms, getAtom, getAtomByName, getExchangeableFamilies, getFamily, getIdentifier, getThreeLetterCode, hashCode, removeAtom, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.LeafSubstructure

containsAtomWithName, flatToString, getAtomByName, getChainIdentifier, getIdentifier, getInsertionCode, getModelIdentifier, getPdbIdentifier, getPdbLines, getSerial, getThreeLetterCode

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.AtomContainer

getAllAtoms, getAtom, removeAtom

Methods inherited from interface de.bioforscher.singa.structure.model.oak.Exchangeable

addExchangeableFamily, getContainingFamilies, getExchangeableFamilies, getFamily

Method Detail

isAnnotatedAsHeteroAtom

public boolean isAnnotatedAsHeteroAtom()

Specified by:

isAnnotatedAsHeteroAtom in interface LeafSubstructure<AminoAcidFamily>

getPosition

public Vector3D getPosition()

Specified by:

getPosition in interface LeafSubstructure<AminoAcidFamily>

getCopy

public AminoAcid getCopy()

Description copied from interface: LeafSubstructure

Returns a copy of this LeafSubstructure.

Specified by:

getCopy in interface LeafSubstructure<AminoAcidFamily>

Returns:

A copy of this leaf substructure.