de.bioforscher.singa.structure.model.mmtf

Class MmtfNucleotide

java.lang.Object

de.bioforscher.singa.structure.model.mmtf.MmtfLeafSubstructure<NucleotideFamily>

de.bioforscher.singa.structure.model.mmtf.MmtfNucleotide

All Implemented Interfaces:

AtomContainer, LeafSubstructure<NucleotideFamily>, Nucleotide, Exchangeable<NucleotideFamily>

public class MmtfNucleotide
extends MmtfLeafSubstructure<NucleotideFamily>
implements Nucleotide

The implementation of Nucleotides for mmtf structures.

Author:

cl

Field Summary

Fields inherited from class de.bioforscher.singa.structure.model.mmtf.MmtfLeafSubstructure

exchangeableFamilies, family

Method Summary

Modifier and Type	Method and Description
String	flatToString() Returns the flat String representation of this leaf substructure in the form:
Nucleotide	getCopy() Returns a copy of this LeafSubstructure.
boolean	isAnnotatedAsHeteroAtom()
String	toString()

Methods inherited from class de.bioforscher.singa.structure.model.mmtf.MmtfLeafSubstructure

containsAtomWithName, equals, getAllAtoms, getAtom, getAtomByName, getExchangeableFamilies, getFamily, getIdentifier, getThreeLetterCode, hashCode, removeAtom

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.LeafSubstructure

containsAtomWithName, getAtomByName, getChainIdentifier, getIdentifier, getInsertionCode, getModelIdentifier, getPdbIdentifier, getPdbLines, getPosition, getSerial, getThreeLetterCode

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.AtomContainer

getAllAtoms, getAtom, removeAtom

Methods inherited from interface de.bioforscher.singa.structure.model.oak.Exchangeable

addExchangeableFamily, getContainingFamilies, getExchangeableFamilies, getFamily

Method Detail

isAnnotatedAsHeteroAtom

public boolean isAnnotatedAsHeteroAtom()

Specified by:

isAnnotatedAsHeteroAtom in interface LeafSubstructure<NucleotideFamily>

flatToString

public String flatToString()

Description copied from interface: LeafSubstructure

Returns the flat String representation of this leaf substructure in the form:

     [LeafIdentifier] [ThreeLetterCode]
 

For example:

     1C0A-1-B-631 C
     1C0A-1-A-78 ARG
     1C0A-1-A-1048 HOH
 

Specified by:

flatToString in interface LeafSubstructure<NucleotideFamily>

Returns:

The flat String representation of this leaf substructure.

toString

public String toString()

Overrides:

toString in class MmtfLeafSubstructure<NucleotideFamily>

getCopy

public Nucleotide getCopy()

Description copied from interface: LeafSubstructure

Returns a copy of this LeafSubstructure.

Specified by:

getCopy in interface LeafSubstructure<NucleotideFamily>

Returns:

A copy of this leaf substructure.