AtomName (singa-structure 0.3.3 API)

java.lang.Object
- java.lang.Enum<AtomName>
- - de.bioforscher.singa.structure.model.oak.AtomName

All Implemented Interfaces:

Serializable, Comparable<AtomName>
```
public enum AtomName
extends Enum<AtomName>
```
Most (some) of the AtomNames in the PDB.

Enum Constant Summary

Enum Constants
Enum Constant and Description
`C`
`C10`
`C11`
`C12`
`C14`
`C15`
`C16`
`C17`
`C1Pr`
`C1St`
`C2`
`C26`
`C27`
`C28`
`C29`
`C2Pr`
`C2St`
`C32`
`C38`
`C39`
`C3Pr`
`C3St`
`C4`
`C4Pr`
`C4St`
`C5`
`C53`
`C54`
`C55`
`C56`
`C5M`
`C5Pr`
`C5St`
`C6`
`C7`
`C8`
`CA`
`CB`
`CD`
`CD1`
`CD2`
`CE`
`CE1`
`CE2`
`CE3`
`CG`
`CG1`
`CG2`
`CH2`
`CO`
`CZ`
`CZ2`
`CZ3`
`D`
`D1`
`D2`
`D3`
`DA`
`DA2`
`DA3`
`DB`
`DB1`
`DB2`
`DB3`
`DD1`
`DD11`
`DD12`
`DD13`
`DD2`
`DD21`
`DD22`
`DD23`
`DD3`
`DDD1`
`DDD2`
`DDD3`
`DE`
`DE1`
`DE2`
`DE21`
`DE22`
`DE3`
`DG`
`DG1`
`DG11`
`DG12`
`DG13`
`DG2`
`DG21`
`DG22`
`DG23`
`DG3`
`DH`
`DH11`
`DH12`
`DH2`
`DH21`
`DH22`
`DXT`
`DZ`
`DZ1`
`DZ2`
`DZ3`
`H`
`H1`
`H2`
`H3`
`HA`
`HA1`
`HA2`
`HA3`
`HB`
`HB1`
`HB2`
`HB3`
`HD`
`HD1`
`HD11`
`HD12`
`HD13`
`HD2`
`HD21`
`HD22`
`HD23`
`HD3`
`HDD1`
`HDD2`
`HDD3`
`HE`
`HE1`
`HE2`
`HE21`
`HE22`
`HE3`
`HG`
`HG1`
`HG11`
`HG12`
`HG13`
`HG2`
`HG21`
`HG22`
`HG23`
`HG3`
`HH`
`HH11`
`HH12`
`HH2`
`HH21`
`HH22`
`HN`
`HT1`
`HT2`
`HT3`
`HXT`
`HZ`
`HZ1`
`HZ2`
`HZ3`
`LH`
`N`
`N1`
`N2`
`N3`
`N4`
`N5`
`N6`
`N7`
`N9`
`ND1`
`ND2`
`NE`
`NE1`
`NE2`
`NH1`
`NH2`
`NZ`
`O`
`O1P`
`O2`
`O2P`
`O2Pr`
`O3P`
`O3Pr`
`O3St`
`O4`
`O4Pr`
`O4St`
`O5Pr`
`O5St`
`O6`
`O9`
`OD1`
`OD2`
`OE1`
`OE2`
`OG`
`OG1`
`OG2`
`OH`
`ONEHT`
`OP1`
`OP2`
`OP3`
`OXT`
`P`
`SC`
`SD`
`SG`
`THREEHB`
`THREEHT`
`TWOHB`
`TWOHD`
`TWOHE`
`TWOHG`
`TWOHT`
`UNK`

Field Summary

Fields
Modifier and Type	Field and Description
`static EnumSet<AtomName>`	`ALANINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`ARGININE_ATOM_NAMES`
`static EnumSet<AtomName>`	`ASPARAGINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`ASPARTIC_ACID_ATOM_NAMES`
`static EnumSet<AtomName>`	`CYSTEINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`GLUTAMIC_ACID_ATOM_NAMES`
`static EnumSet<AtomName>`	`GLUTAMINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`GLYCINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`HISTIDINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`ISOLEUCINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`LEUCINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`LYSINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`METHIONINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`PHENYLALANINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`PROLINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`SERINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`THREONINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`TRYPTOPHAN_ATOM_NAMES`
`static EnumSet<AtomName>`	`TYROSINE_ATOM_NAMES`
`static EnumSet<AtomName>`	`UNKNOWN_ATOM_NAMES`
`static EnumSet<AtomName>`	`VALINE_ATOM_NAMES`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static AtomName`	`getAtomNameFromString(String atomName)`
`Element`	`getElement()`
`String`	`getName()`
`static AtomName`	`valueOf(String name)` Returns the enum constant of this type with the specified name.
`static AtomName[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

H
```
public static final AtomName H
```

H1
```
public static final AtomName H1
```

H2
```
public static final AtomName H2
```

H3
```
public static final AtomName H3
```

HA
```
public static final AtomName HA
```

HA1
```
public static final AtomName HA1
```

HA2
```
public static final AtomName HA2
```

HA3
```
public static final AtomName HA3
```

HB
```
public static final AtomName HB
```

HB1
```
public static final AtomName HB1
```

HB2
```
public static final AtomName HB2
```

HB3
```
public static final AtomName HB3
```

HD1
```
public static final AtomName HD1
```

HD11
```
public static final AtomName HD11
```

HD12
```
public static final AtomName HD12
```

HD13
```
public static final AtomName HD13
```

HD
```
public static final AtomName HD
```

HD2
```
public static final AtomName HD2
```

HD21
```
public static final AtomName HD21
```

HD22
```
public static final AtomName HD22
```

HD23
```
public static final AtomName HD23
```

HDD1
```
public static final AtomName HDD1
```

HDD2
```
public static final AtomName HDD2
```

HDD3
```
public static final AtomName HDD3
```

HD3
```
public static final AtomName HD3
```

HE
```
public static final AtomName HE
```

HE1
```
public static final AtomName HE1
```

HE2
```
public static final AtomName HE2
```

HE3
```
public static final AtomName HE3
```

HE21
```
public static final AtomName HE21
```

HE22
```
public static final AtomName HE22
```

HG
```
public static final AtomName HG
```

HG1
```
public static final AtomName HG1
```

HG2
```
public static final AtomName HG2
```

HG3
```
public static final AtomName HG3
```

HG11
```
public static final AtomName HG11
```

HG12
```
public static final AtomName HG12
```

HG13
```
public static final AtomName HG13
```

HG21
```
public static final AtomName HG21
```

HG22
```
public static final AtomName HG22
```

HG23
```
public static final AtomName HG23
```

HH
```
public static final AtomName HH
```

HH11
```
public static final AtomName HH11
```

HH12
```
public static final AtomName HH12
```

HH2
```
public static final AtomName HH2
```

HH21
```
public static final AtomName HH21
```

HH22
```
public static final AtomName HH22
```

HN
```
public static final AtomName HN
```

HT1
```
public static final AtomName HT1
```

HT2
```
public static final AtomName HT2
```

HT3
```
public static final AtomName HT3
```

HXT
```
public static final AtomName HXT
```

HZ
```
public static final AtomName HZ
```

HZ1
```
public static final AtomName HZ1
```

HZ2
```
public static final AtomName HZ2
```

HZ3
```
public static final AtomName HZ3
```

ONEHT
```
public static final AtomName ONEHT
```

TWOHB
```
public static final AtomName TWOHB
```

TWOHD
```
public static final AtomName TWOHD
```

TWOHE
```
public static final AtomName TWOHE
```

TWOHG
```
public static final AtomName TWOHG
```

TWOHT
```
public static final AtomName TWOHT
```

THREEHB
```
public static final AtomName THREEHB
```

THREEHT
```
public static final AtomName THREEHT
```

D
```
public static final AtomName D
```

D1
```
public static final AtomName D1
```

D2
```
public static final AtomName D2
```

D3
```
public static final AtomName D3
```

DA
```
public static final AtomName DA
```

DA2
```
public static final AtomName DA2
```

DA3
```
public static final AtomName DA3
```

DB
```
public static final AtomName DB
```

DB1
```
public static final AtomName DB1
```

DB2
```
public static final AtomName DB2
```

DB3
```
public static final AtomName DB3
```

DD1
```
public static final AtomName DD1
```

DD11
```
public static final AtomName DD11
```

DD12
```
public static final AtomName DD12
```

DD13
```
public static final AtomName DD13
```

DD2
```
public static final AtomName DD2
```

DD21
```
public static final AtomName DD21
```

DD22
```
public static final AtomName DD22
```

DD23
```
public static final AtomName DD23
```

DDD1
```
public static final AtomName DDD1
```

DDD2
```
public static final AtomName DDD2
```

DDD3
```
public static final AtomName DDD3
```

DD3
```
public static final AtomName DD3
```

DE
```
public static final AtomName DE
```

DE1
```
public static final AtomName DE1
```

DE2
```
public static final AtomName DE2
```

DE3
```
public static final AtomName DE3
```

DE21
```
public static final AtomName DE21
```

DE22
```
public static final AtomName DE22
```

DG
```
public static final AtomName DG
```

DG1
```
public static final AtomName DG1
```

DG11
```
public static final AtomName DG11
```

DG12
```
public static final AtomName DG12
```

DG13
```
public static final AtomName DG13
```

DG2
```
public static final AtomName DG2
```

DG21
```
public static final AtomName DG21
```

DG22
```
public static final AtomName DG22
```

DG23
```
public static final AtomName DG23
```

DG3
```
public static final AtomName DG3
```

DH
```
public static final AtomName DH
```

DH11
```
public static final AtomName DH11
```

DH12
```
public static final AtomName DH12
```

DH2
```
public static final AtomName DH2
```

DH21
```
public static final AtomName DH21
```

DH22
```
public static final AtomName DH22
```

DXT
```
public static final AtomName DXT
```

DZ
```
public static final AtomName DZ
```

DZ1
```
public static final AtomName DZ1
```

DZ2
```
public static final AtomName DZ2
```

DZ3
```
public static final AtomName DZ3
```

C
```
public static final AtomName C
```

C1Pr
```
public static final AtomName C1Pr
```

C1St
```
public static final AtomName C1St
```

C2
```
public static final AtomName C2
```

C2Pr
```
public static final AtomName C2Pr
```

C2St
```
public static final AtomName C2St
```

C3Pr
```
public static final AtomName C3Pr
```

C3St
```
public static final AtomName C3St
```

C4
```
public static final AtomName C4
```

C4Pr
```
public static final AtomName C4Pr
```

C4St
```
public static final AtomName C4St
```

C5
```
public static final AtomName C5
```

C5Pr
```
public static final AtomName C5Pr
```

C5St
```
public static final AtomName C5St
```

C5M
```
public static final AtomName C5M
```

C6
```
public static final AtomName C6
```

C7
```
public static final AtomName C7
```

C8
```
public static final AtomName C8
```

C10
```
public static final AtomName C10
```

C11
```
public static final AtomName C11
```

C26
```
public static final AtomName C26
```

C27
```
public static final AtomName C27
```

C28
```
public static final AtomName C28
```

C29
```
public static final AtomName C29
```

C12
```
public static final AtomName C12
```

C14
```
public static final AtomName C14
```

C15
```
public static final AtomName C15
```

C16
```
public static final AtomName C16
```

C17
```
public static final AtomName C17
```

C32
```
public static final AtomName C32
```

C38
```
public static final AtomName C38
```

C39
```
public static final AtomName C39
```

C53
```
public static final AtomName C53
```

C54
```
public static final AtomName C54
```

C55
```
public static final AtomName C55
```

C56
```
public static final AtomName C56
```

CA
```
public static final AtomName CA
```

CB
```
public static final AtomName CB
```

CD
```
public static final AtomName CD
```

CD1
```
public static final AtomName CD1
```

CD2
```
public static final AtomName CD2
```

CE
```
public static final AtomName CE
```

CE1
```
public static final AtomName CE1
```

CE2
```
public static final AtomName CE2
```

CE3
```
public static final AtomName CE3
```

CG
```
public static final AtomName CG
```

CG1
```
public static final AtomName CG1
```

CG2
```
public static final AtomName CG2
```

CH2
```
public static final AtomName CH2
```

CZ
```
public static final AtomName CZ
```

CZ2
```
public static final AtomName CZ2
```

CZ3
```
public static final AtomName CZ3
```

N
```
public static final AtomName N
```

N1
```
public static final AtomName N1
```

N2
```
public static final AtomName N2
```

N3
```
public static final AtomName N3
```

N4
```
public static final AtomName N4
```

N5
```
public static final AtomName N5
```

N6
```
public static final AtomName N6
```

N7
```
public static final AtomName N7
```

N9
```
public static final AtomName N9
```

ND1
```
public static final AtomName ND1
```

ND2
```
public static final AtomName ND2
```

NE
```
public static final AtomName NE
```

NE1
```
public static final AtomName NE1
```

NE2
```
public static final AtomName NE2
```

NH1
```
public static final AtomName NH1
```

NH2
```
public static final AtomName NH2
```

NZ
```
public static final AtomName NZ
```

O
```
public static final AtomName O
```

O1P
```
public static final AtomName O1P
```

O2
```
public static final AtomName O2
```

O2Pr
```
public static final AtomName O2Pr
```

O2P
```
public static final AtomName O2P
```

O3Pr
```
public static final AtomName O3Pr
```

O3St
```
public static final AtomName O3St
```

O3P
```
public static final AtomName O3P
```

O4
```
public static final AtomName O4
```

O4Pr
```
public static final AtomName O4Pr
```

O4St
```
public static final AtomName O4St
```

O5Pr
```
public static final AtomName O5Pr
```

O5St
```
public static final AtomName O5St
```

O6
```
public static final AtomName O6
```

O9
```
public static final AtomName O9
```

OD1
```
public static final AtomName OD1
```

OD2
```
public static final AtomName OD2
```

OE1
```
public static final AtomName OE1
```

OE2
```
public static final AtomName OE2
```

OG
```
public static final AtomName OG
```

OG1
```
public static final AtomName OG1
```

OG2
```
public static final AtomName OG2
```

OH
```
public static final AtomName OH
```

OP1
```
public static final AtomName OP1
```

OP2
```
public static final AtomName OP2
```

OP3
```
public static final AtomName OP3
```

OXT
```
public static final AtomName OXT
```

P
```
public static final AtomName P
```

SG
```
public static final AtomName SG
```

SD
```
public static final AtomName SD
```

UNK
```
public static final AtomName UNK
```

CO
```
public static final AtomName CO
```

LH
```
public static final AtomName LH
```

SC
```
public static final AtomName SC
```

Field Detail

ALANINE_ATOM_NAMES

public static final EnumSet<AtomName> ALANINE_ATOM_NAMES

ARGININE_ATOM_NAMES

public static final EnumSet<AtomName> ARGININE_ATOM_NAMES

ASPARAGINE_ATOM_NAMES

public static final EnumSet<AtomName> ASPARAGINE_ATOM_NAMES

ASPARTIC_ACID_ATOM_NAMES

public static final EnumSet<AtomName> ASPARTIC_ACID_ATOM_NAMES

CYSTEINE_ATOM_NAMES

public static final EnumSet<AtomName> CYSTEINE_ATOM_NAMES

GLUTAMIC_ACID_ATOM_NAMES

public static final EnumSet<AtomName> GLUTAMIC_ACID_ATOM_NAMES

GLUTAMINE_ATOM_NAMES

public static final EnumSet<AtomName> GLUTAMINE_ATOM_NAMES

GLYCINE_ATOM_NAMES

public static final EnumSet<AtomName> GLYCINE_ATOM_NAMES

HISTIDINE_ATOM_NAMES

public static final EnumSet<AtomName> HISTIDINE_ATOM_NAMES

ISOLEUCINE_ATOM_NAMES

public static final EnumSet<AtomName> ISOLEUCINE_ATOM_NAMES

LEUCINE_ATOM_NAMES

public static final EnumSet<AtomName> LEUCINE_ATOM_NAMES

LYSINE_ATOM_NAMES

public static final EnumSet<AtomName> LYSINE_ATOM_NAMES

METHIONINE_ATOM_NAMES

public static final EnumSet<AtomName> METHIONINE_ATOM_NAMES

PHENYLALANINE_ATOM_NAMES

public static final EnumSet<AtomName> PHENYLALANINE_ATOM_NAMES

PROLINE_ATOM_NAMES

public static final EnumSet<AtomName> PROLINE_ATOM_NAMES

SERINE_ATOM_NAMES

public static final EnumSet<AtomName> SERINE_ATOM_NAMES

THREONINE_ATOM_NAMES

public static final EnumSet<AtomName> THREONINE_ATOM_NAMES

TRYPTOPHAN_ATOM_NAMES

public static final EnumSet<AtomName> TRYPTOPHAN_ATOM_NAMES

TYROSINE_ATOM_NAMES

public static final EnumSet<AtomName> TYROSINE_ATOM_NAMES

VALINE_ATOM_NAMES

public static final EnumSet<AtomName> VALINE_ATOM_NAMES

UNKNOWN_ATOM_NAMES

public static final EnumSet<AtomName> UNKNOWN_ATOM_NAMES

Method Detail
- values
```
public static AtomName[] values()
```
  Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (AtomName c : AtomName.values())
    System.out.println(c);
```
  Returns:
  
  an array containing the constants of this enum type, in the order they are declared
- valueOf
```
public static AtomName valueOf(String name)
```
  Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
  
  Parameters:
  
  name - the name of the enum constant to be returned.
  
  Returns:
  
  the enum constant with the specified name
  
  Throws:
  
  IllegalArgumentException - if this enum type has no constant with the specified name
  
  NullPointerException - if the argument is null
- getAtomNameFromString
```
public static AtomName getAtomNameFromString(String atomName)
```
- getName
```
public String getName()
```
- getElement
```
public Element getElement()
```

Enum AtomName

Enum Constant Summary

Field Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

H

H1

H2

H3

HA

HA1

HA2

HA3

HB

HB1

HB2

HB3

HD1

HD11

HD12

HD13

HD

HD2

HD21

HD22

HD23

HDD1

HDD2

HDD3

HD3

HE

HE1

HE2

HE3

HE21

HE22

HG

HG1

HG2

HG3

HG11

HG12

HG13

HG21

HG22

HG23

HH

HH11

HH12

HH2

HH21

HH22

HN

HT1

HT2

HT3

HXT

HZ

HZ1

HZ2

HZ3

ONEHT

TWOHB

TWOHD

TWOHE

TWOHG

TWOHT

THREEHB

THREEHT

D

D1

D2

D3

DA

DA2

DA3

DB

DB1