de.bioforscher.singa.structure.model.oak

Class OakAminoAcid

java.lang.Object

de.bioforscher.singa.structure.model.oak.OakLeafSubstructure<AminoAcidFamily>

de.bioforscher.singa.structure.model.oak.OakAminoAcid

All Implemented Interfaces:

AminoAcid, AtomContainer, LeafSubstructure<AminoAcidFamily>, Exchangeable<AminoAcidFamily>

public class OakAminoAcid
extends OakLeafSubstructure<AminoAcidFamily>
implements AminoAcid

Author:

cl

Constructor Summary

Constructors

Constructor and Description
OakAminoAcid(LeafIdentifier leafIdentifier, AminoAcidFamily family)
OakAminoAcid(LeafIdentifier identifer, AminoAcidFamily aminoAcidFamily, String threeLetterCode)
OakAminoAcid(OakAminoAcid oakAminoAcid)

Method Summary

Modifier and Type	Method and Description
OakAminoAcid	getCopy() Returns a copy of this LeafSubstructure.
Vector3D	getPosition()

Methods inherited from class de.bioforscher.singa.structure.model.oak.OakLeafSubstructure

addAtom, addBondBetween, addBondBetween, addBondBetween, addExchangeableFamily, containsAtomWithName, equals, getAllAtoms, getAtom, getAtomByName, getBonds, getExchangeableFamilies, getFamily, getIdentifier, getNextEdgeIdentifier, getThreeLetterCode, hashCode, isAnnotatedAsHeteroAtom, removeAtom, setAnnotatedAsHetAtom, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.LeafSubstructure

containsAtomWithName, flatToString, getAtomByName, getChainIdentifier, getIdentifier, getInsertionCode, getModelIdentifier, getPdbIdentifier, getPdbLines, getSerial, getThreeLetterCode, isAnnotatedAsHeteroAtom

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.AtomContainer

getAllAtoms, getAtom, removeAtom

Methods inherited from interface de.bioforscher.singa.structure.model.oak.Exchangeable

addExchangeableFamily, getContainingFamilies, getExchangeableFamilies, getFamily

Constructor Detail

OakAminoAcid

public OakAminoAcid(LeafIdentifier leafIdentifier,
                    AminoAcidFamily family)

OakAminoAcid

public OakAminoAcid(LeafIdentifier identifer,
                    AminoAcidFamily aminoAcidFamily,
                    String threeLetterCode)

OakAminoAcid

public OakAminoAcid(OakAminoAcid oakAminoAcid)

Method Detail

getCopy

public OakAminoAcid getCopy()

Description copied from interface: LeafSubstructure

Returns a copy of this LeafSubstructure.

Specified by:

getCopy in interface LeafSubstructure<AminoAcidFamily>

Returns:

A copy of this leaf substructure.

getPosition

public Vector3D getPosition()

Specified by:

getPosition in interface LeafSubstructure<AminoAcidFamily>