de.bioforscher.singa.structure.model.oak

Class OakBond

java.lang.Object

de.bioforscher.singa.structure.model.oak.OakBond

public class OakBond
extends Object

Author:

cl

Field Summary

Fields

Modifier and Type	Field and Description
protected OakAtom	source
protected OakAtom	target

Constructor Summary

Constructors

Constructor and Description
OakBond(int identifier)
OakBond(int identifier, BondType bondType)
OakBond(OakBond bond) This is a copy constructor.

Method Summary

Modifier and Type	Method and Description
boolean	connectsAtom(OakAtom oakAtom)
boolean	equals(Object o)
BondType	getBondType()
OakBond	getCopy()
int	getIdentifier()
OakAtom	getSource()
OakAtom	getTarget()
int	hashCode()
void	setBondType(BondType bondType)
void	setSource(OakAtom source)
void	setTarget(OakAtom target)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

source

protected OakAtom source

target

protected OakAtom target

Constructor Detail

OakBond

public OakBond(int identifier)

OakBond

public OakBond(int identifier,
               BondType bondType)

OakBond

public OakBond(OakBond bond)

This is a copy constructor. Creates a new bond with the same attributes as the given bond. The source and target atoms of this bond are NOT copied. Due to the nature of this operation it would be bad to keep a part of the relations to the lifecycle of the bond to copy. If you want to keep the neighbouring atoms, copy the superordinate substructure that contains this bond and it will also traverse and copy the connected atoms.

Parameters:

bond - The bond to copy.

Method Detail

getIdentifier

public int getIdentifier()

getBondType

public BondType getBondType()

setBondType

public void setBondType(BondType bondType)

getSource

public OakAtom getSource()

setSource

public void setSource(OakAtom source)

getTarget

public OakAtom getTarget()

setTarget

public void setTarget(OakAtom target)

connectsAtom

public boolean connectsAtom(OakAtom oakAtom)

getCopy

public OakBond getCopy()

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object