de.bioforscher.singa.structure.model.oak

Class OakLigand

java.lang.Object

de.bioforscher.singa.structure.model.oak.OakLeafSubstructure<LigandFamily>

de.bioforscher.singa.structure.model.oak.OakLigand

All Implemented Interfaces:

AtomContainer, LeafSubstructure<LigandFamily>, Ligand, Exchangeable<LigandFamily>

public class OakLigand
extends OakLeafSubstructure<LigandFamily>
implements Ligand

Author:

cl

Constructor Summary

Constructors

Constructor and Description
OakLigand(LeafIdentifier leafIdentifier, LigandFamily family)
OakLigand(OakLigand oakLigand)

Method Summary

Modifier and Type	Method and Description
OakLigand	getCopy() Returns a copy of this LeafSubstructure.
String	getName()
void	setName(String name)

Methods inherited from class de.bioforscher.singa.structure.model.oak.OakLeafSubstructure

addAtom, addBondBetween, addBondBetween, addBondBetween, addExchangeableFamily, containsAtomWithName, equals, getAllAtoms, getAtom, getAtomByName, getBonds, getExchangeableFamilies, getFamily, getIdentifier, getNextEdgeIdentifier, getThreeLetterCode, hashCode, isAnnotatedAsHeteroAtom, removeAtom, setAnnotatedAsHetAtom, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.LeafSubstructure

containsAtomWithName, flatToString, getAtomByName, getChainIdentifier, getIdentifier, getInsertionCode, getModelIdentifier, getPdbIdentifier, getPdbLines, getPosition, getSerial, getThreeLetterCode, isAnnotatedAsHeteroAtom

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.AtomContainer

getAllAtoms, getAtom, removeAtom

Methods inherited from interface de.bioforscher.singa.structure.model.oak.Exchangeable

addExchangeableFamily, getContainingFamilies, getExchangeableFamilies, getFamily

Constructor Detail

OakLigand

public OakLigand(LeafIdentifier leafIdentifier,
                 LigandFamily family)

OakLigand

public OakLigand(OakLigand oakLigand)

Method Detail

getName

public String getName()

setName

public void setName(String name)

getCopy

public OakLigand getCopy()

Description copied from interface: LeafSubstructure

Returns a copy of this LeafSubstructure.

Specified by:

getCopy in interface LeafSubstructure<LigandFamily>

Returns:

A copy of this leaf substructure.