de.bioforscher.singa.structure.model.oak

Class OakNucleotide

java.lang.Object

de.bioforscher.singa.structure.model.oak.OakLeafSubstructure<NucleotideFamily>

de.bioforscher.singa.structure.model.oak.OakNucleotide

All Implemented Interfaces:

AtomContainer, LeafSubstructure<NucleotideFamily>, Nucleotide, Exchangeable<NucleotideFamily>

public class OakNucleotide
extends OakLeafSubstructure<NucleotideFamily>
implements Nucleotide

Author:

cl

Constructor Summary

Constructors

Constructor and Description
OakNucleotide(LeafIdentifier leafIdentifier, NucleotideFamily family)
OakNucleotide(LeafIdentifier identifer, NucleotideFamily nucleotideFamily, String threeLetterCode)
OakNucleotide(OakNucleotide oakNucleotide)

Method Summary

Modifier and Type	Method and Description
OakNucleotide	getCopy() Returns a copy of this LeafSubstructure.

Methods inherited from class de.bioforscher.singa.structure.model.oak.OakLeafSubstructure

addAtom, addBondBetween, addBondBetween, addBondBetween, addExchangeableFamily, containsAtomWithName, equals, getAllAtoms, getAtom, getAtomByName, getBonds, getExchangeableFamilies, getFamily, getIdentifier, getNextEdgeIdentifier, getThreeLetterCode, hashCode, isAnnotatedAsHeteroAtom, removeAtom, setAnnotatedAsHetAtom, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.LeafSubstructure

containsAtomWithName, flatToString, getAtomByName, getChainIdentifier, getIdentifier, getInsertionCode, getModelIdentifier, getPdbIdentifier, getPdbLines, getPosition, getSerial, getThreeLetterCode, isAnnotatedAsHeteroAtom

Methods inherited from interface de.bioforscher.singa.structure.model.interfaces.AtomContainer

getAllAtoms, getAtom, removeAtom

Methods inherited from interface de.bioforscher.singa.structure.model.oak.Exchangeable

addExchangeableFamily, getContainingFamilies, getExchangeableFamilies, getFamily

Constructor Detail

OakNucleotide

public OakNucleotide(LeafIdentifier leafIdentifier,
                     NucleotideFamily family)

OakNucleotide

public OakNucleotide(LeafIdentifier identifer,
                     NucleotideFamily nucleotideFamily,
                     String threeLetterCode)

OakNucleotide

public OakNucleotide(OakNucleotide oakNucleotide)

Method Detail

getCopy

public OakNucleotide getCopy()

Description copied from interface: LeafSubstructure

Returns a copy of this LeafSubstructure.

Specified by:

getCopy in interface LeafSubstructure<NucleotideFamily>

Returns:

A copy of this leaf substructure.