de.bioforscher.singa.structure.model.oak

Class StructuralEntityFilter.AtomFilter

java.lang.Object

de.bioforscher.singa.structure.model.oak.StructuralEntityFilter.AtomFilter

Enclosing class:

StructuralEntityFilter

public static final class StructuralEntityFilter.AtomFilter
extends Object

Filters for Atoms.

Constructor Summary

Constructors

Constructor and Description
AtomFilter()

Method Summary

Modifier and Type	Method and Description
static Predicate<Atom>	hasAtomName(AtomName atomName)
static Predicate<Atom>	hasAtomName(String atomName)
static Predicate<Atom>	hasAtomNames(String... atomNames)
static Predicate<Atom>	hasIdentifier(int identifier)
static Predicate<Atom>	isAlphaCarbon()
static Predicate<Atom>	isArbitrary()
static Predicate<Atom>	isBackbone()
static Predicate<Atom>	isBackboneCarbon()
static Predicate<Atom>	isBackboneNitrogen()
static Predicate<Atom>	isBackboneOxygen()
static Predicate<Atom>	isBetaCarbon()
static Predicate<Atom>	isCarbon()
static Predicate<Atom>	isHydrogen()
static Predicate<Atom>	isNitrogen()
static Predicate<Atom>	isOxygen()
static Predicate<Atom>	isPhosphorus()
static Predicate<Atom>	isSideChain()
static Predicate<Atom>	isWithinRange(int startId, int endId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AtomFilter

public AtomFilter()

Method Detail

hasAtomName

public static Predicate<Atom> hasAtomName(String atomName)

hasAtomName

public static Predicate<Atom> hasAtomName(AtomName atomName)

hasAtomNames

public static Predicate<Atom> hasAtomNames(String... atomNames)

hasIdentifier

public static Predicate<Atom> hasIdentifier(int identifier)

isAlphaCarbon

public static Predicate<Atom> isAlphaCarbon()

isArbitrary

public static Predicate<Atom> isArbitrary()

isBackbone

public static Predicate<Atom> isBackbone()

isBackboneCarbon

public static Predicate<Atom> isBackboneCarbon()

isBackboneNitrogen

public static Predicate<Atom> isBackboneNitrogen()

isBackboneOxygen

public static Predicate<Atom> isBackboneOxygen()

isBetaCarbon

public static Predicate<Atom> isBetaCarbon()

isCarbon

public static Predicate<Atom> isCarbon()

isHydrogen

public static Predicate<Atom> isHydrogen()

isNitrogen

public static Predicate<Atom> isNitrogen()

isOxygen

public static Predicate<Atom> isOxygen()

isPhosphorus

public static Predicate<Atom> isPhosphorus()

isSideChain

public static Predicate<Atom> isSideChain()

isWithinRange

public static Predicate<Atom> isWithinRange(int startId,
                                            int endId)