Uses of Class
de.bioforscher.singa.structure.model.oak.OakLeafSubstructure

Packages that use OakLeafSubstructure

Package	Description
de.bioforscher.singa.structure.model.molecules
de.bioforscher.singa.structure.model.oak
de.bioforscher.singa.structure.parser.pdb.structures.tokens

Uses of OakLeafSubstructure in de.bioforscher.singa.structure.model.molecules

Methods in de.bioforscher.singa.structure.model.molecules with parameters of type OakLeafSubstructure

Modifier and Type	Method and Description
static MoleculeGraph	MoleculeGraphs.createMoleculeGraphFromStructure(OakLeafSubstructure<?> leafSubstructure)

Uses of OakLeafSubstructure in de.bioforscher.singa.structure.model.oak

Subclasses of OakLeafSubstructure in de.bioforscher.singa.structure.model.oak

Modifier and Type	Class and Description
class	OakAminoAcid
class	OakLigand
class	OakNucleotide

Methods in de.bioforscher.singa.structure.model.oak that return OakLeafSubstructure

Modifier and Type	Method and Description
static OakLeafSubstructure<?>	LeafSubstructureFactory.createLeafSubstructure(LeafIdentifier leafIdentifier, StructuralFamily family)

Methods in de.bioforscher.singa.structure.model.oak with parameters of type OakLeafSubstructure

Modifier and Type	Method and Description
void	OakChain.addLeafSubstructure(OakLeafSubstructure leafSubstructure)
void	OakChain.addLeafSubstructure(OakLeafSubstructure leafSubstructure, boolean consecutivePart)

Constructors in de.bioforscher.singa.structure.model.oak with parameters of type OakLeafSubstructure

Constructor and Description
OakLeafSubstructure(OakLeafSubstructure<FamilyType> leafSubstructure) This is a copy constructor.

Uses of OakLeafSubstructure in de.bioforscher.singa.structure.parser.pdb.structures.tokens

Methods in de.bioforscher.singa.structure.parser.pdb.structures.tokens that return OakLeafSubstructure

Modifier and Type	Method and Description
OakLeafSubstructure<?>	LeafSkeleton.toRealLeafSubstructure(LeafIdentifier identifer, Map<String,OakAtom> atoms)