de.bioforscher.singa.structure.parser.pdb.structures

Interface StructureParser.AdditionalLocalSourceStep

All Known Subinterfaces:

StructureParser.IdentifierStep

Enclosing class:

StructureParser

public static interface StructureParser.AdditionalLocalSourceStep

Using a local pdb installation, additional source steps might be used.

Method Summary

Modifier and Type	Method and Description
StructureParser.MultiParser	chainList(Path path) Reads the provided chainIdentifier list from a file.
StructureParser.MultiParser	chainList(Path path, String separator) Reads the provided chainIdentifier list from a file.

Method Detail

chainList

StructureParser.MultiParser chainList(Path path)

Reads the provided chainIdentifier list from a file. Each line in the file should have the format:

[PDBId][separator][ChainId] 

The default separator is tab (\t).

Parameters:

path - The path of the chainIdentifier list file

Returns:

The MultiParser.

chainList

StructureParser.MultiParser chainList(Path path,
                                      String separator)

Reads the provided chainIdentifier list from a file. Each line in the file should have the format:

[PDBId][separator][ChainId] 

Parameters:

path - The path of the chainIdentifier list file

separator - The separator between the PDBId and the ChainId

Returns:

The MultiParser.