de.bioforscher.singa.structure.parser.pdb.structures

Class StructureParser.LocalPDB

java.lang.Object

de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.LocalPDB

Enclosing class:

StructureParser

public static class StructureParser.LocalPDB
extends Object

This class represents a local PDB installation.

Constructor Summary

Constructors

Constructor and Description
LocalPDB(String localPdbLocation, SourceLocation sourceLocation) Creates a new reference for a local pdb installation.

Method Summary

Modifier and Type	Method and Description
Path	getLocalPdbPath() Returns the path to the local pdb.
Path	getPathForPdbIdentifier(String pdbIdentifier) Returns the full path of a given PDB-ID in respect to the local PDB copy.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LocalPDB

public LocalPDB(String localPdbLocation,
                SourceLocation sourceLocation)

Creates a new reference for a local pdb installation.

Parameters:

localPdbLocation - The location of the local PDB installation.

sourceLocation - The type of file used (either SourceLocation.OFFLINE_MMTF or SourceLocation.OFFLINE_PDB).

Method Detail

getLocalPdbPath

public Path getLocalPdbPath()

Returns the path to the local pdb.

Returns:

The path to the local pdb.

getPathForPdbIdentifier

public Path getPathForPdbIdentifier(String pdbIdentifier)

Returns the full path of a given PDB-ID in respect to the local PDB copy.

Parameters:

pdbIdentifier - The PDB-ID for which the full path should be retrieved.

Returns:

The full path of the given PDB-ID.