de.bioforscher.singa.structure.parser.pdb.structures

Interface StructureParser.SingleChainStep

All Known Subinterfaces:

StructureParser.SingleBranchStep

Enclosing class:

StructureParser

public static interface StructureParser.SingleChainStep

Initiates the selection of chains, if a single structure has been chosen.

Method Summary

Modifier and Type	Method and Description
StructureParser.SingleParser	allChains() Parses all chains.
StructureParser.SingleParser	chainIdentifier(String chainIdentifier) If only a single chain should be parsed, choose it here.
StructureParser.SingleParser	everything() Shortcut to parse all chains.
Structure	parse() Returns the parsed structure, skipping user contact with parsing.

Method Detail

chainIdentifier

StructureParser.SingleParser chainIdentifier(String chainIdentifier)

If only a single chain should be parsed, choose it here.

Parameters:

chainIdentifier - The chain to parse.

Returns:

The Parser.

allChains

StructureParser.SingleParser allChains()

Parses all chains.

Returns:

The Parser.

everything

StructureParser.SingleParser everything()

Shortcut to parse all chains.

Returns:

The Parser.

parse

Structure parse()
         throws StructureParserException

Returns the parsed structure, skipping user contact with parsing.

Returns:

The specified structure.

Throws:

StructureParserException