StructureParser (singa-structure 0.3.3 API)

public class StructureParser
extends Object

Parses structures in pdb format.

Nested Classes
Modifier and Type	Class and Description
`static interface`	`StructureParser.AdditionalLocalSourceStep` Using a local pdb installation, additional source steps might be used.
`static interface`	`StructureParser.IdentifierStep` After selecting the source, the identifer(s) to parse can be chosen.
`static class`	`StructureParser.LocalPDB` This class represents a local PDB installation.
`static interface`	`StructureParser.LocalSourceStep` Select a local source to parse from.
`static interface`	`StructureParser.MultiBranchStep` Initiates the structure reduction steps for multiple structures.
`static interface`	`StructureParser.MultiChainStep` Initiates the selection of chains, if multiple structures have been chosen.
`static class`	`StructureParser.MultiParser` The MultiParser performs parsing of multiple structures from a single source.
`protected static class`	`StructureParser.Reducer` This class remembers what general restrictions are to be applied during the parsing.
`static interface`	`StructureParser.SingleBranchStep` Initiates the structure reduction steps for a single structure.
`static interface`	`StructureParser.SingleChainStep` Initiates the selection of chains, if a single structure has been chosen.
`static class`	`StructureParser.SingleParser` This parser should be used if you require only a single structure.

Constructors
Constructor and Description
`StructureParser()`

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static StructureParser.LocalSourceStep`	`local()` Structures will be retrieved from a local source.
`static StructureParser.IdentifierStep`	`mmtf()` Structures will be pulled online.
`static StructureParser.IdentifierStep`	`pdb()` Structures will be pulled online.

Class StructureParser