de.bioforscher.singa.structure.parser.pdb.structures

Class StructureSelector.Selector

java.lang.Object

de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.Selector

All Implemented Interfaces:

StructureSelector.AminoAcidAtomStep, StructureSelector.AtomContainerAtomStep, StructureSelector.AtomStep, StructureSelector.ChainStep, StructureSelector.NucleotideAtomStep, StructureSelector.ResidueStep, StructureSelector.SelectStep, StructureSelector.StructuralModelStep

Enclosing class:

StructureSelector

public static class StructureSelector.Selector
extends Object
implements StructureSelector.StructuralModelStep, StructureSelector.ChainStep, StructureSelector.ResidueStep, StructureSelector.AtomStep, StructureSelector.AminoAcidAtomStep, StructureSelector.NucleotideAtomStep, StructureSelector.AtomContainerAtomStep, StructureSelector.SelectStep

Constructor Summary

Constructors

Constructor and Description
Selector(AminoAcid aminoAcid)
Selector(Chain chain)
Selector(Ligand atomContainer)
Selector(Model structuralModel)
Selector(Nucleotide nucleotide)
Selector(StructuralMotif structuralMotif)
Selector(Structure structure)

Method Summary

Modifier and Type	Method and Description
StructureSelector.AminoAcidAtomStep	aminoAcid(int identifier)
StructureSelector.SelectStep	atom(int identifier)
StructureSelector.AtomContainerAtomStep	atomContainer(int identifier)
StructureSelector.ResidueStep	chain(String identifier)
StructureSelector.ChainStep	model(int identifier)
StructureSelector.NucleotideAtomStep	nucleotide(int identifier)
AminoAcid	selectAminoAcid()
Atom	selectAtom()
Ligand	selectAtomContainer()
Chain	selectChain()
Model	selectModel()
Nucleotide	selectNucleotide()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Selector

public Selector(Structure structure)

Selector

public Selector(Model structuralModel)

Selector

public Selector(Chain chain)

Selector

public Selector(AminoAcid aminoAcid)

Selector

public Selector(Nucleotide nucleotide)

Selector

public Selector(Ligand atomContainer)

Selector

public Selector(StructuralMotif structuralMotif)

Method Detail

model

public StructureSelector.ChainStep model(int identifier)

Specified by:

model in interface StructureSelector.StructuralModelStep

selectModel

public Model selectModel()

Specified by:

selectModel in interface StructureSelector.ChainStep

chain

public StructureSelector.ResidueStep chain(String identifier)

Specified by:

chain in interface StructureSelector.ChainStep

selectChain

public Chain selectChain()

Specified by:

selectChain in interface StructureSelector.ResidueStep

aminoAcid

public StructureSelector.AminoAcidAtomStep aminoAcid(int identifier)

Specified by:

aminoAcid in interface StructureSelector.ResidueStep

selectAminoAcid

public AminoAcid selectAminoAcid()

Specified by:

selectAminoAcid in interface StructureSelector.AminoAcidAtomStep

nucleotide

public StructureSelector.NucleotideAtomStep nucleotide(int identifier)

Specified by:

nucleotide in interface StructureSelector.ResidueStep

selectNucleotide

public Nucleotide selectNucleotide()

Specified by:

selectNucleotide in interface StructureSelector.NucleotideAtomStep

atomContainer

public StructureSelector.AtomContainerAtomStep atomContainer(int identifier)

Specified by:

atomContainer in interface StructureSelector.ResidueStep

selectAtomContainer

public Ligand selectAtomContainer()

Specified by:

selectAtomContainer in interface StructureSelector.AtomContainerAtomStep

atom

public StructureSelector.SelectStep atom(int identifier)

Specified by:

atom in interface StructureSelector.AtomStep

selectAtom

public Atom selectAtom()

Specified by:

selectAtom in interface StructureSelector.SelectStep