Uses of Class
de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.MultiParser

Packages that use StructureParser.MultiParser

Package	Description
de.bioforscher.singa.structure.algorithms.superimposition.fit3d
de.bioforscher.singa.structure.parser.pdb.structures

Uses of StructureParser.MultiParser in de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Methods in de.bioforscher.singa.structure.algorithms.superimposition.fit3d with parameters of type StructureParser.MultiParser

Modifier and Type	Method and Description
Fit3DBuilder.BatchParameterStep	Fit3DBuilder.TargetStep.targets(StructureParser.MultiParser multiParser) Defines the targets against which this Fit3D search should be run in batch mode.
Fit3DBuilder.BatchParameterStep	Fit3DBuilder.Builder.targets(StructureParser.MultiParser multiParser)

Uses of StructureParser.MultiParser in de.bioforscher.singa.structure.parser.pdb.structures

Methods in de.bioforscher.singa.structure.parser.pdb.structures that return StructureParser.MultiParser

Modifier and Type	Method and Description
StructureParser.MultiParser	StructureParser.MultiChainStep.allChains() Parses all chains.
StructureParser.MultiParser	StructureParser.MultiChainStep.chain(String chainIdentifier) If only a single chain should be parsed, choose it here.
StructureParser.MultiParser	StructureParser.AdditionalLocalSourceStep.chainList(Path path) Reads the provided chainIdentifier list from a file.
StructureParser.MultiParser	StructureParser.AdditionalLocalSourceStep.chainList(Path path, String separator) Reads the provided chainIdentifier list from a file.
StructureParser.MultiParser	StructureParser.MultiChainStep.everything() Shortcut to parse all chains.
StructureParser.MultiParser	StructureParser.MultiParser.setOptions(StructureParserOptions options) Sets the StructureParserOptions for this parsing process.