Uses of Class
de.bioforscher.singa.structure.parser.pdb.structures.StructureParserOptions

Packages that use StructureParserOptions

Package	Description
de.bioforscher.singa.structure.model.oak
de.bioforscher.singa.structure.parser.pdb.structures
de.bioforscher.singa.structure.parser.pfam

Uses of StructureParserOptions in de.bioforscher.singa.structure.model.oak

Methods in de.bioforscher.singa.structure.model.oak with parameters of type StructureParserOptions

Modifier and Type	Method and Description
static OakAminoAcid	LeafSubstructureFactory.createAminoAcidFromAtoms(LeafIdentifier leafIdentifier, AminoAcidFamily aminoAcidFamily, Map<String,OakAtom> atoms, StructureParserOptions options)
static OakNucleotide	LeafSubstructureFactory.createNucleotideFromAtoms(LeafIdentifier leafIdentifier, NucleotideFamily nucleotideFamily, Map<String,OakAtom> atoms, StructureParserOptions options)

Uses of StructureParserOptions in de.bioforscher.singa.structure.parser.pdb.structures

Methods in de.bioforscher.singa.structure.parser.pdb.structures that return StructureParserOptions

Modifier and Type	Method and Description
static StructureParserOptions	StructureParserOptions.withSettings(StructureParserOptions.Setting... settings) Create a new Options object using enum constants.

Methods in de.bioforscher.singa.structure.parser.pdb.structures with parameters of type StructureParserOptions

Modifier and Type	Method and Description
StructureParser.SingleParser	StructureParser.SingleParser.setOptions(StructureParserOptions options) Sets the StructureParserOptions.
StructureParser.MultiParser	StructureParser.MultiParser.setOptions(StructureParserOptions options) Sets the StructureParserOptions for this parsing process.

Uses of StructureParserOptions in de.bioforscher.singa.structure.parser.pfam

Fields in de.bioforscher.singa.structure.parser.pfam declared as StructureParserOptions

Modifier and Type	Field and Description
StructureParserOptions	PfamParser.Builder.structureParserOptions

Methods in de.bioforscher.singa.structure.parser.pfam with parameters of type StructureParserOptions

Modifier and Type	Method and Description
PfamParser.DomainStep	PfamParser.DomainStep.structureParserOptions(StructureParserOptions structureParserOptions) Specify StructureParserOptions used to parse the structures.
PfamParser.DomainStep	PfamParser.Builder.structureParserOptions(StructureParserOptions structureParserOptions)