Uses of Package
de.bioforscher.singa.structure.parser.pdb.structures

Packages that use de.bioforscher.singa.structure.parser.pdb.structures

Package	Description
de.bioforscher.singa.structure.algorithms.superimposition.fit3d
de.bioforscher.singa.structure.model.oak
de.bioforscher.singa.structure.parser.pdb.structures
de.bioforscher.singa.structure.parser.pfam

Classes in de.bioforscher.singa.structure.parser.pdb.structures used by de.bioforscher.singa.structure.algorithms.superimposition.fit3d

Class and Description
StructureParser.MultiParser The MultiParser performs parsing of multiple structures from a single source.

Classes in de.bioforscher.singa.structure.parser.pdb.structures used by de.bioforscher.singa.structure.model.oak

Class and Description
StructureParserOptions Options for faster or more detailed parsing.

Classes in de.bioforscher.singa.structure.parser.pdb.structures used by de.bioforscher.singa.structure.parser.pdb.structures

Class and Description
SourceLocation The location the files should be parsed from.
StructureParser.AdditionalLocalSourceStep Using a local pdb installation, additional source steps might be used.
StructureParser.IdentifierStep After selecting the source, the identifer(s) to parse can be chosen.
StructureParser.LocalPDB This class represents a local PDB installation.
StructureParser.LocalSourceStep Select a local source to parse from.
StructureParser.MultiBranchStep Initiates the structure reduction steps for multiple structures.
StructureParser.MultiChainStep Initiates the selection of chains, if multiple structures have been chosen.
StructureParser.MultiParser The MultiParser performs parsing of multiple structures from a single source.
StructureParser.SingleBranchStep Initiates the structure reduction steps for a single structure.
StructureParser.SingleChainStep Initiates the selection of chains, if a single structure has been chosen.
StructureParser.SingleParser This parser should be used if you require only a single structure.
StructureParserException Exceptions encountered during parsing of molecular structures.
StructureParserOptions Options for faster or more detailed parsing.
StructureParserOptions.Setting Settings that can be passed to the Options.
StructureSelector.AminoAcidAtomStep
StructureSelector.AtomContainerAtomStep
StructureSelector.AtomStep
StructureSelector.ChainStep
StructureSelector.NucleotideAtomStep
StructureSelector.ResidueStep
StructureSelector.SelectStep
StructureSelector.StructuralModelStep

Classes in de.bioforscher.singa.structure.parser.pdb.structures used by de.bioforscher.singa.structure.parser.pfam

Class and Description
StructureParserOptions Options for faster or more detailed parsing.