de.bioforscher.singa.structure.parser.pdb.structures.tokens

Class LeafSkeleton

java.lang.Object

de.bioforscher.singa.structure.parser.pdb.structures.tokens.LeafSkeleton

public class LeafSkeleton
extends Object

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	LeafSkeleton.AssignedFamily

Constructor Summary

Constructors

Constructor and Description
LeafSkeleton(String threeLetterCode, String parent, LeafSkeleton.AssignedFamily assignedFamily, Map<de.bioforscher.singa.core.utility.Pair<String>,BondType> bonds)

Method Summary

Modifier and Type	Method and Description
LeafSkeleton.AssignedFamily	getAssignedFamily()
Map<de.bioforscher.singa.core.utility.Pair<String>,BondType>	getBonds()
String	getParent()
String	getThreeLetterCode()
void	setAssignedFamily(LeafSkeleton.AssignedFamily assignedFamily)
void	setBonds(Map<de.bioforscher.singa.core.utility.Pair<String>,BondType> bonds)
void	setParent(String parent)
void	setThreeLetterCode(String threeLetterCode)
OakLeafSubstructure<?>	toRealLeafSubstructure(LeafIdentifier identifer, Map<String,OakAtom> atoms)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LeafSkeleton

public LeafSkeleton(String threeLetterCode,
                    String parent,
                    LeafSkeleton.AssignedFamily assignedFamily,
                    Map<de.bioforscher.singa.core.utility.Pair<String>,BondType> bonds)

Method Detail

getThreeLetterCode

public String getThreeLetterCode()

setThreeLetterCode

public void setThreeLetterCode(String threeLetterCode)

getParent

public String getParent()

setParent

public void setParent(String parent)

getAssignedFamily

public LeafSkeleton.AssignedFamily getAssignedFamily()

setAssignedFamily

public void setAssignedFamily(LeafSkeleton.AssignedFamily assignedFamily)

getBonds

public Map<de.bioforscher.singa.core.utility.Pair<String>,BondType> getBonds()

setBonds

public void setBonds(Map<de.bioforscher.singa.core.utility.Pair<String>,BondType> bonds)

toRealLeafSubstructure

public OakLeafSubstructure<?> toRealLeafSubstructure(LeafIdentifier identifer,
                                                     Map<String,OakAtom> atoms)