de.bioforscher.singa.structure.parser.pfam

Interface PfamParser.DomainStep

All Known Implementing Classes:

PfamParser.Builder

Enclosing class:

PfamParser

public static interface PfamParser.DomainStep

Method Summary

Modifier and Type	Method and Description
List<Chain>	chains() Parse all chains carrying one Pfam domain with the desired Pfam-ID.
List<List<LeafSubstructure<?>>>	domains() Parse only the domains.
PfamParser.DomainStep	structureParserOptions(StructureParserOptions structureParserOptions) Specify StructureParserOptions used to parse the structures.

Method Detail

structureParserOptions

PfamParser.DomainStep structureParserOptions(StructureParserOptions structureParserOptions)

Specify StructureParserOptions used to parse the structures.

Parameters:

structureParserOptions - The StructureParserOptions to be used

Returns:

The PfamParser.DomainStep to decide if domains or chains should be parsed.

domains

List<List<LeafSubstructure<?>>> domains()

Parse only the domains.

Returns:

Pfam domains.

chains

List<Chain> chains()

Parse all chains carrying one Pfam domain with the desired Pfam-ID.

Returns:

Chains with Pfam domains.