Uses of Interface
de.bioforscher.singa.structure.parser.pfam.PfamParser.DomainStep

Packages that use PfamParser.DomainStep

Package	Description
de.bioforscher.singa.structure.parser.pfam

Uses of PfamParser.DomainStep in de.bioforscher.singa.structure.parser.pfam

Classes in de.bioforscher.singa.structure.parser.pfam that implement PfamParser.DomainStep

Modifier and Type	Class and Description
static class	PfamParser.Builder

Methods in de.bioforscher.singa.structure.parser.pfam that return PfamParser.DomainStep

Modifier and Type	Method and Description
PfamParser.DomainStep	PfamParser.ChainStep.all() Parse all chains annotated in Pfam.
PfamParser.DomainStep	PfamParser.Builder.all()
PfamParser.DomainStep	PfamParser.ChainStep.chainList(Path chainListPath) Parse all chains annotated in Pfam and listed in the given chain list.
PfamParser.DomainStep	PfamParser.Builder.chainList(Path chainListPath)
PfamParser.DomainStep	PfamParser.ChainStep.chainList(Path chainListPath, String chainListSeparator) Parse all chains annotated in Pfam and listed in the given chain list with the custom separator.
PfamParser.DomainStep	PfamParser.Builder.chainList(Path chainListPath, String chainListSeparator)
PfamParser.DomainStep	PfamParser.DomainStep.structureParserOptions(StructureParserOptions structureParserOptions) Specify StructureParserOptions used to parse the structures.
PfamParser.DomainStep	PfamParser.Builder.structureParserOptions(StructureParserOptions structureParserOptions)