de.bioforscher.singa.structure.parser.pfam.tokens

Interface PfamToken

All Known Implementing Classes:

PfamToken.IdentifierToken, PfamToken.PDBToken

public interface PfamToken

A token describing the Pfam mapping file.

Author:

fk

Nested Class Summary

Nested Classes

Modifier and Type	Interface and Description
static class	PfamToken.IdentifierToken
static class	PfamToken.PDBToken

Field Summary

Fields

Modifier and Type	Field and Description
static String	PFAM_MAPPING_FILE_SEPARATOR

Method Summary

Modifier and Type	Method and Description
default String	extract(String line)
static String	extractValueFromPfamLine(String line, PfamToken token)
int	getColumn()

Field Detail

PFAM_MAPPING_FILE_SEPARATOR

static final String PFAM_MAPPING_FILE_SEPARATOR

See Also:

Constant Field Values

Method Detail

extractValueFromPfamLine

static String extractValueFromPfamLine(String line,
                                       PfamToken token)

getColumn

int getColumn()

extract

default String extract(String line)