de.bioforscher.singa.structure.parser.plip

Class MetalComplex

java.lang.Object

de.bioforscher.singa.structure.parser.plip.Interaction

de.bioforscher.singa.structure.parser.plip.MetalComplex

public class MetalComplex
extends Interaction

Author:

cl

Constructor Summary

Constructors

Constructor and Description
MetalComplex(int plipIdentifier)

Method Summary

Modifier and Type	Method and Description
int	getAtom1()
int	getAtom2()
int	getComplexnum()
int	getCoordination()
double	getDistance()
int	getFirstSourceAtom() For MetalComplexes the first source atom is the atom identifier of the metal ion.
int	getFirstTargetAtom() For MetalComplexes the first target atom is the atom identifier of the interaction partner (possibly ligand or residue).
String	getGeometry()
String	getLocation()
String	getMetalType()
double	getRms()
void	setAtom1(int atom1)
void	setAtom2(int atom2)
void	setComplexnum(int complexnum)
void	setCoordination(int coordination)
void	setDistance(double distance)
void	setGeometry(String geometry)
void	setLocation(String location)
void	setMetalType(String metalType)
void	setRms(double rms)
String	toString()

Methods inherited from class de.bioforscher.singa.structure.parser.plip.Interaction

getLigandCoordinate, getPlipIdentifier, getProteinCoordinate, getSource, getTarget, setLigandCoordinate, setPlipIdentifier, setProteinCoordinate, setSource, setTarget

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MetalComplex

public MetalComplex(int plipIdentifier)

Method Detail

getAtom1

public int getAtom1()

setAtom1

public void setAtom1(int atom1)

getAtom2

public int getAtom2()

setAtom2

public void setAtom2(int atom2)

getDistance

public double getDistance()

setDistance

public void setDistance(double distance)

getRms

public double getRms()

setRms

public void setRms(double rms)

getGeometry

public String getGeometry()

setGeometry

public void setGeometry(String geometry)

getLocation

public String getLocation()

setLocation

public void setLocation(String location)

getMetalType

public String getMetalType()

setMetalType

public void setMetalType(String metalType)

getCoordination

public int getCoordination()

setCoordination

public void setCoordination(int coordination)

getComplexnum

public int getComplexnum()

setComplexnum

public void setComplexnum(int complexnum)

getFirstSourceAtom

public int getFirstSourceAtom()

For MetalComplexes the first source atom is the atom identifier of the metal ion.

Specified by:

getFirstSourceAtom in class Interaction

getFirstTargetAtom

public int getFirstTargetAtom()

For MetalComplexes the first target atom is the atom identifier of the interaction partner (possibly ligand or residue).

Specified by:

getFirstTargetAtom in class Interaction

toString

public String toString()

Overrides:

toString in class Object