de.bioforscher.singa.structure.parser.plip

Class PiCation

java.lang.Object

de.bioforscher.singa.structure.parser.plip.Interaction

de.bioforscher.singa.structure.parser.plip.PiCation

public class PiCation
extends Interaction

Author:

cl

Constructor Summary

Constructors

Constructor and Description
PiCation(int plipIdentifier)

Method Summary

Modifier and Type	Method and Description
List<Integer>	getAtoms1()
List<Integer>	getAtoms2()
double	getDistance()
int	getFirstSourceAtom()
int	getFirstTargetAtom()
String	getLigandGroup()
double	getOffset()
boolean	isProtcharged()
void	setAtoms1(List<Integer> atoms1)
void	setAtoms2(List<Integer> atoms2)
void	setDistance(double distance)
void	setLigandGroup(String ligandGroup)
void	setOffset(double offset)
void	setProtcharged(boolean protcharged)
String	toString()

Methods inherited from class de.bioforscher.singa.structure.parser.plip.Interaction

getLigandCoordinate, getPlipIdentifier, getProteinCoordinate, getSource, getTarget, setLigandCoordinate, setPlipIdentifier, setProteinCoordinate, setSource, setTarget

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

PiCation

public PiCation(int plipIdentifier)

Method Detail

getAtoms1

public List<Integer> getAtoms1()

setAtoms1

public void setAtoms1(List<Integer> atoms1)

getAtoms2

public List<Integer> getAtoms2()

setAtoms2

public void setAtoms2(List<Integer> atoms2)

getDistance

public double getDistance()

setDistance

public void setDistance(double distance)

getOffset

public double getOffset()

setOffset

public void setOffset(double offset)

isProtcharged

public boolean isProtcharged()

setProtcharged

public void setProtcharged(boolean protcharged)

getLigandGroup

public String getLigandGroup()

setLigandGroup

public void setLigandGroup(String ligandGroup)

getFirstSourceAtom

public int getFirstSourceAtom()

Specified by:

getFirstSourceAtom in class Interaction

getFirstTargetAtom

public int getFirstTargetAtom()

Specified by:

getFirstTargetAtom in class Interaction

toString

public String toString()

Overrides:

toString in class Object