de.bioforscher.singa.structure.parser.plip

Class SaltBridge

java.lang.Object

de.bioforscher.singa.structure.parser.plip.Interaction

de.bioforscher.singa.structure.parser.plip.SaltBridge

public class SaltBridge
extends Interaction

Author:

cl

Constructor Summary

Constructors

Constructor and Description
SaltBridge(int plipIdentifier)

Method Summary

Modifier and Type	Method and Description
List<Integer>	getAtoms1()
List<Integer>	getAtoms2()
double	getDistance()
int	getFirstSourceAtom()
int	getFirstTargetAtom()
String	getLigandGroup()
boolean	isProtIsPos()
void	mergeWith(SaltBridge other)
void	setAtoms1(List<Integer> atoms1)
void	setAtoms2(List<Integer> atoms2)
void	setDistance(double distance)
void	setLigandGroup(String ligandGroup)
void	setProtIsPos(boolean protIsPos)
String	toString()

Methods inherited from class de.bioforscher.singa.structure.parser.plip.Interaction

getLigandCoordinate, getPlipIdentifier, getProteinCoordinate, getSource, getTarget, setLigandCoordinate, setPlipIdentifier, setProteinCoordinate, setSource, setTarget

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SaltBridge

public SaltBridge(int plipIdentifier)

Method Detail

getAtoms1

public List<Integer> getAtoms1()

setAtoms1

public void setAtoms1(List<Integer> atoms1)

getAtoms2

public List<Integer> getAtoms2()

setAtoms2

public void setAtoms2(List<Integer> atoms2)

getDistance

public double getDistance()

setDistance

public void setDistance(double distance)

isProtIsPos

public boolean isProtIsPos()

setProtIsPos

public void setProtIsPos(boolean protIsPos)

getLigandGroup

public String getLigandGroup()

setLigandGroup

public void setLigandGroup(String ligandGroup)

mergeWith

public void mergeWith(SaltBridge other)

getFirstSourceAtom

public int getFirstSourceAtom()

Specified by:

getFirstSourceAtom in class Interaction

getFirstTargetAtom

public int getFirstTargetAtom()

Specified by:

getFirstTargetAtom in class Interaction

toString

public String toString()

Overrides:

toString in class Object