Hierarchy For All Packages

Package Hierarchies:

• de.bioforscher.singa.structure.algorithms.gyration,
• de.bioforscher.singa.structure.algorithms.molecules,
• de.bioforscher.singa.structure.algorithms.superimposition,
• de.bioforscher.singa.structure.algorithms.superimposition.affinity,
• de.bioforscher.singa.structure.algorithms.superimposition.consensus,
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d,
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations,
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.statistics,
• de.bioforscher.singa.structure.algorithms.superimposition.scores,
• de.bioforscher.singa.structure.elements,
• de.bioforscher.singa.structure.features.molarmass,
• de.bioforscher.singa.structure.model.families,
• de.bioforscher.singa.structure.model.identifiers,
• de.bioforscher.singa.structure.model.interfaces,
• de.bioforscher.singa.structure.model.mmtf,
• de.bioforscher.singa.structure.model.molecules,
• de.bioforscher.singa.structure.model.oak,
• de.bioforscher.singa.structure.parser.pdb.ligands,
• de.bioforscher.singa.structure.parser.pdb.rest,
• de.bioforscher.singa.structure.parser.pdb.rest.cluster,
• de.bioforscher.singa.structure.parser.pdb.structures,
• de.bioforscher.singa.structure.parser.pdb.structures.tokens,
• de.bioforscher.singa.structure.parser.pfam,
• de.bioforscher.singa.structure.parser.pfam.tokens,
• de.bioforscher.singa.structure.parser.plip,
• de.bioforscher.singa.structure.parser.sifts

Class Hierarchy

• java.lang.Object
  • de.bioforscher.singa.mathematics.graphs.model.AbstractEdge<NodeType> (implements de.bioforscher.singa.mathematics.graphs.model.Edge<NodeType>)
    • de.bioforscher.singa.structure.model.molecules.MoleculeBond
  • de.bioforscher.singa.features.model.AbstractFeature<FeatureContent> (implements de.bioforscher.singa.features.model.Feature<FeatureContent>)
    • de.bioforscher.singa.structure.features.molarmass.MolarMass (implements javax.measure.Quantity<Q>)
  • de.bioforscher.singa.features.identifiers.model.AbstractIdentifier<IdentifierType> (implements de.bioforscher.singa.features.model.Feature<FeatureContent>, de.bioforscher.singa.features.identifiers.model.Identifier<IdentifierType>)
    • de.bioforscher.singa.structure.model.identifiers.PDBIdentifier
  • de.bioforscher.singa.mathematics.graphs.model.AbstractMapGraph<NodeType,EdgeType,VectorType,IdentifierType> (implements de.bioforscher.singa.mathematics.graphs.model.Graph<NodeType,EdgeType,IdentifierType>)
    • de.bioforscher.singa.structure.model.molecules.MoleculeGraph
  • de.bioforscher.singa.mathematics.graphs.model.AbstractNode<NodeType,VectorType,IdentifierType> (implements de.bioforscher.singa.mathematics.graphs.model.Node<NodeType,VectorType,IdentifierType>)
    • de.bioforscher.singa.structure.model.molecules.MoleculeAtom
  • de.bioforscher.singa.core.parser.AbstractParser<ResultType> (implements de.bioforscher.singa.core.parser.Parser<ResultType>)
    • de.bioforscher.singa.core.parser.AbstractHTMLParser<ResultType>
      • de.bioforscher.singa.core.parser.AbstractXMLParser<ResultType>
        • de.bioforscher.singa.structure.parser.plip.PlipParser
        • de.bioforscher.singa.structure.parser.sifts.UniProtResidueMapParser
      • de.bioforscher.singa.structure.parser.sifts.PDBEnzymeMapper
      • de.bioforscher.singa.structure.parser.sifts.PDBPfamMapper
      • de.bioforscher.singa.structure.parser.pdb.rest.PDBRestEndpoint<ResultType>
        • de.bioforscher.singa.structure.parser.pdb.rest.cluster.PDBSequenceCluster
      • de.bioforscher.singa.structure.parser.sifts.PDBUniProtMapper
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.AbstractRepresentationScheme (implements de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationScheme)
    • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.AlphaCarbonRepresentationScheme
    • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.BetaCarbonRepresentationScheme
    • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.CentroidRepresentationScheme
    • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.LastHeavySidechainRepresentationScheme
    • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.SideChainCentroidRepresentationScheme
  • de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment
  • de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.Builder (implements de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.AtomStep, de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.InputStep, de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.ParameterStep)
  • de.bioforscher.singa.structure.model.oak.AminoAcids
  • de.bioforscher.singa.structure.parser.pdb.ligands.CifFileParser
  • de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusAlignment
  • de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder
  • de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.Builder (implements de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.AtomStep, de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.InputStep, de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.ParameterStep)
  • de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusContainer
  • de.bioforscher.singa.structure.elements.ElectronConfiguration
  • de.bioforscher.singa.structure.elements.Element
  • de.bioforscher.singa.structure.elements.ElementProvider
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DAlignment (implements de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3D)
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DAlignmentBatch (implements de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3D)
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.Builder (implements de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.AtomStep, de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.BatchParameterStep, de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.ParameterStep, de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.QueryStep, de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.SiteConfigurationStep, de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.SiteParameterConfigurationStep, de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.SiteStep, de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.TargetStep)
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DMatch (implements java.lang.Comparable<T>)
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DSiteAlignment (implements de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3D)
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.statistics.FofanovEstimation (implements de.bioforscher.singa.structure.algorithms.superimposition.fit3d.statistics.StatisticalModel)
  • de.bioforscher.singa.structure.algorithms.gyration.Gyration
  • de.bioforscher.singa.structure.parser.plip.Interaction
    • de.bioforscher.singa.structure.parser.plip.HalogenBond
    • de.bioforscher.singa.structure.parser.plip.HydrogenBond
    • de.bioforscher.singa.structure.parser.plip.HydrophobicInteraction
    • de.bioforscher.singa.structure.parser.plip.MetalComplex
    • de.bioforscher.singa.structure.parser.plip.PiCation
    • de.bioforscher.singa.structure.parser.plip.PiStacking
    • de.bioforscher.singa.structure.parser.plip.SaltBridge
    • de.bioforscher.singa.structure.parser.plip.WaterBridge
  • de.bioforscher.singa.structure.parser.plip.InteractionContainer
  • de.bioforscher.singa.structure.model.identifiers.LeafIdentifier (implements java.lang.Comparable<T>)
  • de.bioforscher.singa.structure.model.identifiers.LeafIdentifiers
  • de.bioforscher.singa.structure.parser.pdb.structures.tokens.LeafSkeleton
  • de.bioforscher.singa.structure.model.oak.LeafSubstructureFactory
  • de.bioforscher.singa.structure.model.families.LigandFamily (implements de.bioforscher.singa.structure.model.families.StructuralFamily<FamilyType>)
  • de.bioforscher.singa.structure.parser.pdb.ligands.LigandParserService
  • de.bioforscher.singa.structure.model.mmtf.MmtfAtom (implements de.bioforscher.singa.structure.model.interfaces.Atom)
  • de.bioforscher.singa.structure.model.mmtf.MmtfChain (implements de.bioforscher.singa.structure.model.interfaces.Chain)
  • de.bioforscher.singa.structure.model.mmtf.MmtfLeafSubstructure<FamilyType> (implements de.bioforscher.singa.structure.model.interfaces.LeafSubstructure<FamilyType>)
    • de.bioforscher.singa.structure.model.mmtf.MmtfAminoAcid (implements de.bioforscher.singa.structure.model.interfaces.AminoAcid)
    • de.bioforscher.singa.structure.model.mmtf.MmtfLigand (implements de.bioforscher.singa.structure.model.interfaces.Ligand)
    • de.bioforscher.singa.structure.model.mmtf.MmtfNucleotide (implements de.bioforscher.singa.structure.model.interfaces.Nucleotide)
  • de.bioforscher.singa.structure.model.mmtf.MmtfModel (implements de.bioforscher.singa.structure.model.interfaces.Model)
  • de.bioforscher.singa.structure.parser.pdb.structures.MmtfReducer
  • de.bioforscher.singa.structure.model.mmtf.MmtfStructure (implements de.bioforscher.singa.structure.model.interfaces.Structure)
  • de.bioforscher.singa.structure.model.molecules.MoleculeGraphs
  • de.bioforscher.singa.structure.algorithms.molecules.MoleculeIsomorphism
  • de.bioforscher.singa.structure.algorithms.molecules.MoleculeIsomorphismFinder
  • de.bioforscher.singa.structure.algorithms.molecules.MoleculeIsomorphismFinder.AtomConditions
  • de.bioforscher.singa.structure.algorithms.molecules.MoleculeIsomorphismFinder.BondConditions
  • de.bioforscher.singa.structure.algorithms.molecules.MoleculePathFinder
  • de.bioforscher.singa.structure.model.oak.OakAtom (implements de.bioforscher.singa.structure.model.interfaces.Atom)
  • de.bioforscher.singa.structure.model.oak.OakBond
  • de.bioforscher.singa.structure.model.oak.OakChain (implements de.bioforscher.singa.structure.model.interfaces.Chain)
  • de.bioforscher.singa.structure.model.oak.OakLeafSubstructure<FamilyType> (implements de.bioforscher.singa.structure.model.interfaces.LeafSubstructure<FamilyType>)
    • de.bioforscher.singa.structure.model.oak.OakAminoAcid (implements de.bioforscher.singa.structure.model.interfaces.AminoAcid)
    • de.bioforscher.singa.structure.model.oak.OakLigand (implements de.bioforscher.singa.structure.model.interfaces.Ligand)
    • de.bioforscher.singa.structure.model.oak.OakNucleotide (implements de.bioforscher.singa.structure.model.interfaces.Nucleotide)
  • de.bioforscher.singa.structure.model.oak.OakModel (implements de.bioforscher.singa.structure.model.interfaces.Model)
  • de.bioforscher.singa.structure.model.oak.OakStructure (implements de.bioforscher.singa.structure.model.interfaces.Structure)
  • de.bioforscher.singa.structure.parser.pdb.rest.cluster.PDBSequenceClusterMember
  • de.bioforscher.singa.structure.parser.pfam.PfamParser
  • de.bioforscher.singa.structure.parser.pfam.PfamParser.Builder (implements de.bioforscher.singa.structure.parser.pfam.PfamParser.ChainStep, de.bioforscher.singa.structure.parser.pfam.PfamParser.DomainStep, de.bioforscher.singa.structure.parser.pfam.PfamParser.FamilyStep, de.bioforscher.singa.structure.parser.pfam.PfamParser.VersionStep)
  • de.bioforscher.singa.structure.parser.plip.PlipContentHandler (implements org.xml.sax.ContentHandler)
  • de.bioforscher.singa.structure.parser.plip.PlipShellGenerator
  • de.bioforscher.singa.structure.algorithms.superimposition.scores.PsScore
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationSchemeFactory
  • de.bioforscher.singa.structure.parser.sifts.ResidueMapContentHandler (implements org.xml.sax.ContentHandler)
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.statistics.StarkEstimation (implements de.bioforscher.singa.structure.algorithms.superimposition.fit3d.statistics.StatisticalModel)
  • de.bioforscher.singa.structure.model.oak.StructuralEntityFilter
  • de.bioforscher.singa.structure.model.oak.StructuralEntityFilter.AtomFilter
  • de.bioforscher.singa.structure.model.oak.StructuralEntityFilter.ChainFilter
  • de.bioforscher.singa.structure.model.oak.StructuralEntityFilter.LeafFilter
  • de.bioforscher.singa.structure.model.oak.StructuralMotif (implements de.bioforscher.singa.structure.model.interfaces.LeafSubstructureContainer)
  • de.bioforscher.singa.structure.model.oak.StructuralMotifs
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureCollector
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.LocalPDB
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.MultiParser (implements java.util.Iterator<E>)
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.Reducer
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.SingleParser
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParserOptions
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureRepresentation
  • de.bioforscher.singa.structure.model.oak.Structures
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.Selector (implements de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.AminoAcidAtomStep, de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.AtomContainerAtomStep, de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.AtomStep, de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.ChainStep, de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.NucleotideAtomStep, de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.ResidueStep, de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.SelectStep, de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.StructuralModelStep)
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureWriter
  • de.bioforscher.singa.structure.algorithms.superimposition.SubstructureSuperimposer
    • de.bioforscher.singa.structure.algorithms.superimposition.FragmentSubstructureSuperimposer
  • de.bioforscher.singa.structure.algorithms.superimposition.SubstructureSuperimposition (implements de.bioforscher.singa.mathematics.algorithms.superimposition.Superimposition<T>)
  • de.bioforscher.singa.structure.parser.pdb.structures.tokens.TerminatorTokens
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusException
        • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DException
        • de.bioforscher.singa.structure.parser.pdb.structures.StructureParserException
        • de.bioforscher.singa.structure.algorithms.superimposition.SubstructureSuperimpositionException
  • de.bioforscher.singa.structure.model.identifiers.UniqueAtomIdentifer (implements java.lang.Comparable<T>)
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.ValidAlignmentGenerator
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.ValidCandidateGenerator
  • de.bioforscher.singa.structure.algorithms.superimposition.scores.XieScore

Interface Hierarchy

• de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.AtomStep
• de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.InputStep
• de.bioforscher.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.ParameterStep
• de.bioforscher.singa.structure.model.interfaces.Atom
• de.bioforscher.singa.structure.model.interfaces.AtomContainer
  • de.bioforscher.singa.structure.model.interfaces.AminoAcid
  • de.bioforscher.singa.structure.model.interfaces.Chain
  • de.bioforscher.singa.structure.model.interfaces.LeafSubstructure<FamilyType> (also extends de.bioforscher.singa.structure.model.oak.Exchangeable<FamilyType>)
    • de.bioforscher.singa.structure.model.interfaces.AminoAcid
    • de.bioforscher.singa.structure.model.interfaces.Ligand
    • de.bioforscher.singa.structure.model.interfaces.Nucleotide
  • de.bioforscher.singa.structure.model.interfaces.LeafSubstructureContainer
    • de.bioforscher.singa.structure.model.interfaces.Chain
    • de.bioforscher.singa.structure.model.interfaces.Model (also extends de.bioforscher.singa.structure.model.interfaces.ChainContainer)
    • de.bioforscher.singa.structure.model.interfaces.Structure (also extends de.bioforscher.singa.structure.model.interfaces.ChainContainer)
  • de.bioforscher.singa.structure.model.interfaces.Ligand
  • de.bioforscher.singa.structure.model.interfaces.Model (also extends de.bioforscher.singa.structure.model.interfaces.ChainContainer, de.bioforscher.singa.structure.model.interfaces.LeafSubstructureContainer)
  • de.bioforscher.singa.structure.model.interfaces.Nucleotide
  • de.bioforscher.singa.structure.model.interfaces.Structure (also extends de.bioforscher.singa.structure.model.interfaces.ChainContainer, de.bioforscher.singa.structure.model.interfaces.LeafSubstructureContainer)
• de.bioforscher.singa.structure.model.interfaces.ChainContainer
  • de.bioforscher.singa.structure.model.interfaces.Model (also extends de.bioforscher.singa.structure.model.interfaces.LeafSubstructureContainer)
  • de.bioforscher.singa.structure.model.interfaces.Structure (also extends de.bioforscher.singa.structure.model.interfaces.LeafSubstructureContainer)
• java.lang.Comparable<T>
  • de.bioforscher.singa.structure.model.families.StructuralFamily<FamilyType>
• de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.AtomStep
• de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.InputStep
• de.bioforscher.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.ParameterStep
• de.bioforscher.singa.structure.model.oak.Exchangeable<FamilyType>
  • de.bioforscher.singa.structure.model.interfaces.AminoAcid
  • de.bioforscher.singa.structure.model.interfaces.LeafSubstructure<FamilyType> (also extends de.bioforscher.singa.structure.model.interfaces.AtomContainer)
    • de.bioforscher.singa.structure.model.interfaces.AminoAcid
    • de.bioforscher.singa.structure.model.interfaces.Ligand
    • de.bioforscher.singa.structure.model.interfaces.Nucleotide
  • de.bioforscher.singa.structure.model.interfaces.Ligand
  • de.bioforscher.singa.structure.model.interfaces.Nucleotide
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3D
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.AtomStep
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.BatchParameterStep
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.ParameterStep
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.QueryStep
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.SiteConfigurationStep
  • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.SiteParameterConfigurationStep
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.SiteStep
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.TargetStep
• de.bioforscher.singa.structure.parser.pdb.structures.tokens.PDBToken
• de.bioforscher.singa.structure.parser.pfam.PfamParser.ChainStep
• de.bioforscher.singa.structure.parser.pfam.PfamParser.DomainStep
• de.bioforscher.singa.structure.parser.pfam.PfamParser.FamilyStep
• de.bioforscher.singa.structure.parser.pfam.PfamParser.VersionStep
• de.bioforscher.singa.structure.parser.pfam.tokens.PfamToken
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationScheme
• de.bioforscher.singa.structure.algorithms.superimposition.fit3d.statistics.StatisticalModel
• de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.AdditionalLocalSourceStep
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.IdentifierStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.LocalSourceStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.MultiChainStep
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.MultiBranchStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.SingleChainStep
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureParser.SingleBranchStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.AtomStep
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.AminoAcidAtomStep
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.AtomContainerAtomStep
  • de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.NucleotideAtomStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.ChainStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.ResidueStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.SelectStep
• de.bioforscher.singa.structure.parser.pdb.structures.StructureSelector.StructuralModelStep

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • de.bioforscher.singa.structure.model.oak.StructuralMotif.Type
    • de.bioforscher.singa.structure.model.oak.BondType
    • de.bioforscher.singa.structure.model.oak.AtomName
    • de.bioforscher.singa.structure.model.oak.StructuralEntityFilter.LeafFilterType
    • de.bioforscher.singa.structure.model.oak.StructuralEntityFilter.AtomFilterType
    • de.bioforscher.singa.structure.model.molecules.MoleculeBondType
    • de.bioforscher.singa.structure.model.families.AminoAcidFamily (implements de.bioforscher.singa.structure.model.families.StructuralFamily<FamilyType>)
    • de.bioforscher.singa.structure.model.families.NucleotideFamily (implements de.bioforscher.singa.structure.model.families.StructuralFamily<FamilyType>)
    • de.bioforscher.singa.structure.model.families.MatcherFamily (implements de.bioforscher.singa.structure.model.families.StructuralFamily<FamilyType>)
    • de.bioforscher.singa.structure.elements.ElectronConfiguration.AtomicOrbital
    • de.bioforscher.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationSchemeType
    • de.bioforscher.singa.structure.algorithms.superimposition.scores.SubstitutionMatrix
    • de.bioforscher.singa.structure.parser.pdb.rest.cluster.PDBSequenceCluster.PDBSequenceClusterIdentity
    • de.bioforscher.singa.structure.parser.pdb.structures.StructureParserOptions.Setting
    • de.bioforscher.singa.structure.parser.pdb.structures.SourceLocation
    • de.bioforscher.singa.structure.parser.pdb.structures.tokens.HeaderToken (implements de.bioforscher.singa.structure.parser.pdb.structures.tokens.PDBToken)
    • de.bioforscher.singa.structure.parser.pdb.structures.tokens.LeafSkeleton.AssignedFamily
    • de.bioforscher.singa.structure.parser.pdb.structures.tokens.ChainTerminatorToken (implements de.bioforscher.singa.structure.parser.pdb.structures.tokens.PDBToken)
    • de.bioforscher.singa.structure.parser.pdb.structures.tokens.ModelToken (implements de.bioforscher.singa.structure.parser.pdb.structures.tokens.PDBToken)
    • de.bioforscher.singa.structure.parser.pdb.structures.tokens.TitleToken (implements de.bioforscher.singa.structure.parser.pdb.structures.tokens.PDBToken)
    • de.bioforscher.singa.structure.parser.pdb.structures.tokens.AtomToken (implements de.bioforscher.singa.structure.parser.pdb.structures.tokens.PDBToken)
    • de.bioforscher.singa.structure.parser.pdb.structures.tokens.Justification
    • de.bioforscher.singa.structure.parser.pfam.tokens.PfamToken.PDBToken (implements de.bioforscher.singa.structure.parser.pfam.tokens.PfamToken)
    • de.bioforscher.singa.structure.parser.pfam.tokens.PfamToken.IdentifierToken (implements de.bioforscher.singa.structure.parser.pfam.tokens.PfamToken)
    • de.bioforscher.singa.structure.parser.pfam.PfamParser.PfamVersion
    • de.bioforscher.singa.structure.parser.plip.InteractionType
    • de.bioforscher.singa.structure.parser.plip.PlipShellGenerator.InteractionShell