All Classes
-
All Classes Interface Summary Class Summary Enum Summary Exception Summary Class Description BinaryDataHandler CLI Command line interface for interaction with a databases holding e.g.CliOptionsProvider ConfigBase ConfigReader This class reads an xml configuration file, containing the definition of a database connection and the fields used in the database.ConfigurationConstants ConfigurationNotFoundException ConnectionClosable Constants This class provides Constants useful for common tasks.CoStoSysConnection CoStoSysException CoStoSysJedisTools CoStoSysJedisTools.JedisDataFormat CoStoSysRuntimeException CoStoSysSQLRuntimeException DataBaseConnector This class creates a connection with a database and allows for convenient queries and commands.DataBaseConnector.StatusElement DbcExecution DBCIterator<E> Abstract class for iterators returned by theDataBaseConnectorwhich hold JDBC Connection objects.DBCMedlineUtilities DBConfig DbcQuery<T> DBCThreadedIterator<E> This iterator class employs multiple Threads for database queries.DocumentDeletionException ElasticSearchDocumentDeleter ExtractDeleteCitations Extracts PMIDs of deleted Medline documents from Medline Update XML batches.FieldConfig This class holds the definition of fields for the database table to work with.FieldConfigurationManager This class is essentially a HashMap.HiddenConfig This class reads a hidden configuration file in the users home directory.IDocumentDeleter MedlineUpdateException NoReservedConnectionException PMCUpdater PubmedUpdater QueryHelper QueryOptions QueryPubMed SimplePKDataTableDocumentDeleter SubsetStatus TableNotFoundException TableSchemaDoesNotExistException TableSchemaMismatchException ThreadedColumnsIterator Retrieves a list of fields from the requested table.ThreadedColumnsToRetrieveIterator An iterator that returns documents stored in the database identified by the primary keys delivered in a list upon creation of the iterator.UnobtainableConnectionException XmiColumnDataInserter