Uses of Class
de.julielab.costosys.dbconnection.DataBaseConnector

Packages that use DataBaseConnector

Package	Description
de.julielab.costosys.cli
de.julielab.costosys.dbconnection
de.julielab.costosys.dbconnection.util
de.julielab.costosys.medline

Uses of DataBaseConnector in de.julielab.costosys.cli

Methods in de.julielab.costosys.cli with parameters of type DataBaseConnector

Modifier and Type	Method	Description
void	XmiColumnDataInserter.insertXmiColumnData(Path xmiColumnData, String superTable, String columnName, DataBaseConnector dbc)

Constructors in de.julielab.costosys.cli with parameters of type DataBaseConnector

Constructor	Description
BinaryDataHandler(DataBaseConnector dbc, String xmiMetaSchema, Set<String> annotationColumnsToLoad, List<File> typeSystemFiles)

Uses of DataBaseConnector in de.julielab.costosys.dbconnection

Methods in de.julielab.costosys.dbconnection with parameters of type DataBaseConnector

Modifier and Type	Method	Description
void	DbcExecution.execute(DataBaseConnector dbc)
T	DbcQuery.query(DataBaseConnector dbc)

Constructors in de.julielab.costosys.dbconnection with parameters of type DataBaseConnector

Constructor	Description
CoStoSysConnection(DataBaseConnector dbc, Connection connection, boolean shared)
ThreadedColumnsIterator(DataBaseConnector dbc, CoStoSysConnection conn, List<String[]> keys, List<String> fields, String table, long limit, String schemaName)
ThreadedColumnsIterator(DataBaseConnector dbc, CoStoSysConnection conn, List<String[]> keys, List<String> fields, String table, String schemaName)
ThreadedColumnsIterator(DataBaseConnector dbc, CoStoSysConnection conn, List<String> fields, String table)
ThreadedColumnsIterator(DataBaseConnector dbc, CoStoSysConnection conn, List<String> fields, String table, long limit)
ThreadedColumnsIterator(DataBaseConnector dbc, List<String[]> keys, List<String> fields, String table, String schemaName)
ThreadedColumnsIterator(DataBaseConnector dbc, List<String> fields, String table)
ThreadedColumnsIterator(DataBaseConnector dbc, List<String> fields, String table, long limit)
ThreadedColumnsToRetrieveIterator(DataBaseConnector dbc, CoStoSysConnection conn, List<Object[]> ids, String[] tables, String[] schemaNames)	Retrieves data from the database over multiple tables.
ThreadedColumnsToRetrieveIterator(DataBaseConnector dbc, CoStoSysConnection conn, List<Object[]> ids, String table, String schemaName)
ThreadedColumnsToRetrieveIterator(DataBaseConnector dbc, CoStoSysConnection conn, List<Object[]> ids, String table, String whereClause, String schemaName)
ThreadedColumnsToRetrieveIterator(DataBaseConnector dbc, List<Object[]> ids, String[] tables, String[] schemaNames)
ThreadedColumnsToRetrieveIterator(DataBaseConnector dbc, List<Object[]> ids, String table, String schemaName)
ThreadedColumnsToRetrieveIterator(DataBaseConnector dbc, List<Object[]> ids, String table, String whereClause, String schemaName)

Uses of DataBaseConnector in de.julielab.costosys.dbconnection.util

Methods in de.julielab.costosys.dbconnection.util with parameters of type DataBaseConnector

Modifier and Type	Method	Description
static CoStoSysJedisTools.JedisDataFormat	CoStoSysJedisTools.determineDataFormat(DataBaseConnector dbc, String table, String column)	Reads the first row of the given table and returns information about whether the data is in GZIP format and/or the JeDIS binary format.
static Map<String,Boolean>	CoStoSysJedisTools.getFeaturesToMapBinaryFromDb(DataBaseConnector dbc, String xmiMetaSchema)
static Map<String,String>	CoStoSysJedisTools.getNamespaceMap(DataBaseConnector dbc, String xmiMetaSchema)
static Map<Integer,String>	CoStoSysJedisTools.getReverseBinaryMappingFromDb(DataBaseConnector dbc, String xmiMetaSchema)

Uses of DataBaseConnector in de.julielab.costosys.medline

Methods in de.julielab.costosys.medline with parameters of type DataBaseConnector

Modifier and Type	Method	Description
void	PMCUpdater.process(DataBaseConnector dbc, boolean ignoreAlreadyProcessed)
void	PubmedUpdater.process(DataBaseConnector dbc, boolean ignoreAlreadyProcessed)
void	SimplePKDataTableDocumentDeleter.setDbc(DataBaseConnector dbc)