Index (JCoRe XML Mapper 2.1.0 API)

A B C D E F G I M N P S T X

A

addAdditionalData(String, int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
addFeature(ConcreteFeature) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType: Adds a ConcreteFeature to the List of ConcreteFeatures
addFeature(FeatureTemplate) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate: adds a FeatureTemplate to the List
additionalData - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
addPartOfDocumentText(int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
addPartOfDocumentTextXPath(int) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler
addVauleMapping(String, String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate: Adds a ValueMapping to the Template
addXPath(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

B

buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.FSArrayBuilder
buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.MedlineTextSentenceBuilder
buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.StandardTypeBuilder: Instantiates a UIMA type object belonging to the class given by ConcreteType.getFullClassName().
buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.StringArrayBuilder
buildType(ConcreteType, JCas) - Method in interface de.julielab.jcore.reader.xmlmapper.typeBuilder.TypeBuilder: builds a concrete Type to a subtype of TOP, by using reflection

C

clone() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate
clone() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
ConcreteFeature - Class in de.julielab.jcore.reader.xmlmapper.genericTypes: Represents a Feature of an Type from the (user-defined) UIMA TypeSystem with a concrete value.
ConcreteFeature(FeatureTemplate) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature: Creates an new Instance of a ConcretFeatured based on a Feature Template
ConcreteFeature(TypeTemplate) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature: Creates an new Instance of a ConcretFeatured based on a Type Template
ConcreteType - Class in de.julielab.jcore.reader.xmlmapper.genericTypes: Represents a Type form the (user-extended) UIMA TypeSystem that has features with concrete values (ConcreteFeatures).
ConcreteType(TypeTemplate) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType: Creates a new Instance of a ConcreteType on the base of a TypeTemplate
ConcreteType() - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType: Deprecated.
createTemplates() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeFactory: *

D

de.julielab.jcore.reader.xmlmapper.genericTypes - package de.julielab.jcore.reader.xmlmapper.genericTypes
de.julielab.jcore.reader.xmlmapper.mapper - package de.julielab.jcore.reader.xmlmapper.mapper
de.julielab.jcore.reader.xmlmapper.typeBuilder - package de.julielab.jcore.reader.xmlmapper.typeBuilder
de.julielab.jcore.reader.xmlmapper.typeParser - package de.julielab.jcore.reader.xmlmapper.typeParser
DocumentTextData - Class in de.julielab.jcore.reader.xmlmapper.mapper
DocumentTextData() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData
DocumentTextHandler - Class in de.julielab.jcore.reader.xmlmapper.mapper: Handels to parse the DocumentText
DocumentTextHandler() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler
DocumentTextPartParser - Interface in de.julielab.jcore.reader.xmlmapper.mapper

E

ELEMENT_DAY - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: XML element nested in ELEMENT_PUB_DATE
ELEMENT_MEDLINE_DATE - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: XML element, alternative to elements ELEMENT_DAY, ELEMENT_MONTH, ELEMENT_YEAR
ELEMENT_MONTH - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: XML element nested in ELEMENT_PUB_DATE
ELEMENT_YEAR - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: XML element nested in ELEMENT_PUB_DATE
EntityParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser: A special XML mapper parser capable of parsing the IeXML in-line XML annotations used in the CalBc and Mantra projects.
EntityParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.EntityParser
equals(Object) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser
externalParser - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

F

features - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
FeatureTemplate - Class in de.julielab.jcore.reader.xmlmapper.genericTypes: Represents a Template for a Feature which contains all necessary Informations to build a concrete Type.
FeatureTemplate() - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate
FSArrayBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder: The builder fotr FSArrays.
FSArrayBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.FSArrayBuilder
FSArrayParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser: Handels to parse a FSArray Type from a TypeTemplate to a ConcreteType
FSArrayParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.FSArrayParser
fullClassName - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

G

get(int) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData
getAdditionalData() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
getBegin() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
getBegin() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument: Returns the very beginning of the document part, i.e. the first begin of the first substructure (if any).
getBeginOffsets() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
getConcreteFeatures() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType: Returns the list of ConcreteFeatures
getDocumentText() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.StructuredAbstractParser
getDocumentTextParser() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeFactory
getElementFragmentString(VTDNav) - Static method in class de.julielab.jcore.reader.xmlmapper.mapper.MapperUtils: Returns XML fragment corresponding to the XML element vn points to.
getElementText(VTDNav) - Static method in class de.julielab.jcore.reader.xmlmapper.mapper.MapperUtils
getEnd() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
getEnd() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument: Returns the very end of the document part, i.e. the last end of the last substructure (if any).
getEndOffsets() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
getFeatures() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
getFullClassName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature
getFullClassName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
getFullClassName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
getId() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
getMappedValue(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate: returns a mapped Value for a spezific value from the xml
getOffsetPartIDs() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate: returns the first and the last of partOfDocument ids that should be covered by this annotation; that is, the begin of this annotation should be at the begin of the first returned part and the end should be the end of the second returned part.
getParser() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
getParser() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
getParts() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData
getText() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData
getText() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
getTsName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature
getTsName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate
getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.EntityParser
getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.FSArrayParser
getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser
getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.SourceParser
getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser
getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StringArrayParser
getTypeBuilder() - Method in interface de.julielab.jcore.reader.xmlmapper.typeParser.TypeParser
getTypeTemplate() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
getValue() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature: Returns the Value of a ConcreteFeature
getValueMap() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate
getXPath() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
getXPaths() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

I

inlineAnnotation - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
isInlineAnnotation() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
isMultipleInstances() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
isType() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature
isType() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

M

MapperUtils - Class in de.julielab.jcore.reader.xmlmapper.mapper: Some utility methods like string transformations.
MapperUtils() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.MapperUtils
MedlineTextSentenceBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder: TODO insert description
MedlineTextSentenceBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.MedlineTextSentenceBuilder
multipleInstances - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

N

newlineBetweenSections - Static variable in class de.julielab.jcore.reader.xmlmapper.mapper.StructuredAbstractParser
NoDocumentTextCoveredException - Exception in de.julielab.jcore.reader.xmlmapper.typeParser: This exception expresses the case where an annotation should cover a part of the document text, but the referenced part is empty.
NoDocumentTextCoveredException() - Constructor for exception de.julielab.jcore.reader.xmlmapper.typeParser.NoDocumentTextCoveredException

P

parse(byte[], byte[], JCas) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper
parse(File, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper: parses the File to the jcas
parseAndAddToCas(VTDNav, JCas, byte[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler
parseDocumentPart(VTDNav, PartOfDocument, int, JCas, byte[]) - Method in interface de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextPartParser
parseDocumentPart(VTDNav, PartOfDocument, int, JCas, byte[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.StructuredAbstractParser
parser - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
parseSingleType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser
parseStandardFeature(ConcreteType, VTDNav, FeatureTemplate, ConcreteFeature) - Static method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser
parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.EntityParser
parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.FSArrayParser
parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser
parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.SourceParser
parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser
parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StringArrayParser
parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in interface de.julielab.jcore.reader.xmlmapper.typeParser.TypeParser: Parses a Type.
PartOfDocument - Class in de.julielab.jcore.reader.xmlmapper.mapper
PartOfDocument(int) - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
partOfDocuments - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
PATTERN_DAY - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: Pattern for PubDate day
PATTERN_MONTH - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: Pattern for PubDate month
PATTERN_MONTH_CONTEXT - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: Pattern for the context of PubDate month
PATTERN_YEAR - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser: Pattern for PubDate year
PubDateParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser: A Medline TypeParser for the PubDate
PubDateParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser
put(int, PartOfDocument) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

S

setBegin(int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
setBeginOffsets(int[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
setEnd(int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
setEndOffsets(int[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
setExternalParserForPartOfDocument(int, String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler
setFeatures(List<FeatureTemplate>) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
setFullClassName(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
setId(int) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
setInlineAnnotation(boolean) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
setMultipleInstances(boolean) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
setParser(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate: Overrides the parser and sets an external parser
setParser(DocumentTextPartParser) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
setText(String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData
setText(String[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
setTsName(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate
setType(boolean) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate: can mark the feature as a type.
setTypeTemplate(TypeTemplate) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
setValue(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature: Sets the value of a ConcreteFeature
setValueMap(HashMap<String, String>) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate
setxPath(String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument
setXPathForPartOfDocumentText(int, String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler
size() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData
SourceParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser: Handels to parse a Source Feature from a TypeTemplate to a ConcreteType
SourceParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.SourceParser
StandardTypeBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder: In this class, the actual UIMA types are built from the templates which have been filled with values by the type parsers before.
StandardTypeBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.StandardTypeBuilder: creates an new instance of the StandardTypeBuilder
StandardTypeParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser: Parses all standard Types, which does not need a special handling in parsing
StandardTypeParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser
StringArrayBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder: The Builder for String Arrays.
StringArrayBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.StringArrayBuilder
StringArrayParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser: Handels to parse a StringArray Type from a TypeTemplate to a ConcreteType
StringArrayParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.StringArrayParser
StructuredAbstractParser - Class in de.julielab.jcore.reader.xmlmapper.mapper: This class expects a MEDLINE structured abstract pointed to by the PartOfDocument given to the #parseDocumentPart(VTDNav, PartOfDocument, JCas) method or just plain text at the XPath location.
StructuredAbstractParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.StructuredAbstractParser

T

toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature
toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType
toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate
toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate
TypeBuilder - Interface in de.julielab.jcore.reader.xmlmapper.typeBuilder: TODO insert description
TypeFactory - Class in de.julielab.jcore.reader.xmlmapper.genericTypes: Parses the Mapping File to a List of Feature- and Type Templates
TypeFactory(byte[]) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeFactory: creates a new instance of the TypeFactory
TypeParser - Interface in de.julielab.jcore.reader.xmlmapper.typeParser: standard Interface to define an external Parser
TypeTemplate - Class in de.julielab.jcore.reader.xmlmapper.genericTypes: Represents a Template for a type which Contains a List of Feature Templates and all necessary Informations to build a concrete Type.
TypeTemplate() - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate: Creates a new instance of a TypeTemplate

X

XMLMapper - Class in de.julielab.jcore.reader.xmlmapper.mapper: Generic XML to UIMA TypeSystem mapper.
XMLMapper(byte[]) - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper: Creates an new instacne of the XMLMapper
XMLMapper(InputStream) - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper
xPaths - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

A B C D E F G I M N P S T X